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Application of chromosome analysis on genome studies in fruit trees

Research Project

Project/Area Number 24580046
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Horticulture/Landscape architecture
Research InstitutionKagoshima University

Principal Investigator

YAMAMOTO Masashi  鹿児島大学, 農水産獣医学域農学系, 教授 (00305161)

Co-Investigator(Kenkyū-buntansha) 高田 教臣  国立研究開発法人農業・食品産業技術総合研究機構, その他, 研究員 (50355369)
山本 俊哉  国立研究開発法人農業・食品産業技術総合研究機構, 果樹茶業研究部門, ユニット長 (60355360)
清水 徳朗  国立研究開発法人農業・食品産業技術総合研究機構, 果樹茶業研究部門, 上級研究員 (90355404)
Project Period (FY) 2012-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords果樹 / ナシ / 染色体 / 核型分析 / ゲノム / FISH / BAC-FISH / バラ科 / リンゴ / 不和合性 / カンキツ / 遺伝子 / 不和合 / ニホンナシ / FISH / BAC-FISH
Outline of Final Research Achievements

A chromosome preparation method using young leaves of pear was developed. For enzymatic maceration/airdrying (EMA), enzyme mixture containing 4% Cellulase Onozuka RS, 1.5% Macerozyme R200 (Yakult), 0.3% Pectolyase Y-23 (Seishin Pharmaceutical Co., Ltd.), at 37°C for 60-75 min was optimum for chromosome preparation. Black spot disease is one of the most harmful diseases in Japanese pear cultivation. In the present study, the locations of black spot disease resistance/susceptibility related genome regions were studied by fluorescence in situ hybridization using BAC clone (BAC-FISH) on Japanese pear chromosomes. Black spot disease-related genome regions were detected in telomeric positions of two medium size chromosomes. Pear and apple belong to the subfamily Spiraeoideae, tribe Pyreae. The chromosome configurations of both genera were quite similar. Syntenic relationships between the apple and pear genomes are supported by the chromosome configuration in the present study.

Report

(7 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (8 results)

All 2017 2016 2015 2014 2013

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 4 results) Presentation (4 results)

  • [Journal Article] Detection of ribosomal RNA genes in apple (Malus × domestica) using fluorescence in situ hybridization2017

    • Author(s)
      Yamamoto, M., Moriya, S. and Yamamoto, T.
    • Journal Title

      Chromosome Science

      Volume: 19

    • NAID

      130006837150

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Physical mapping of black spot disease resistance/susceptibility-related genome regions in Japanese pear (Pyrus pyrifolia) by BAC-FISH2016

    • Author(s)
      Yamamoto, M., Terakami, S., Takada, N. and Yamamoto, T.
    • Journal Title

      Breeding Science

      Volume: 66 Pages: 444-449

    • NAID

      130005160896

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Physical mapping of black spot disease resistance/susceptibility-related genome regions in Japanese pear (Pyrus pyrifolia) by BAC-FISH2016

    • Author(s)
      Yamamoto, M., Terakami, S. Takada, N. and Yamamoto, T.
    • Journal Title

      Breeding Science

      Volume: 66

    • NAID

      130005160896

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Enzymatic maceration/air-drying method for chromosome observations in the young leaf of pear (<i>Pyrus</i> spp.)2015

    • Author(s)
      Yamamoto, M., Terakami, S. and Yamamoto, T.
    • Journal Title

      Chromosome Science

      Volume: 18 Issue: 1-2 Pages: 29-32

    • DOI

      10.11352/scr.18.29

    • NAID

      130005114057

    • ISSN
      1344-1051, 2185-0852
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 酵素解離空気乾燥法によるナシ(Pyrus spp.)幼葉からの染色体標本の作製2014

    • Author(s)
      山本 雅史、寺上 伸吾、山本 俊哉
    • Organizer
      園芸学会平成26年度秋季大会
    • Place of Presentation
      佐賀大学(佐賀県佐賀市)
    • Year and Date
      2014-09-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Physical mapping of black spot disease resistance/susceptibility-related genome region in Japanese pear (Pyrus pyrifolia) by BAC-FISH2014

    • Author(s)
      Yamamoto, M., S. Terakami, T. Yamamoto
    • Organizer
      29th International Horticultural Congress
    • Place of Presentation
      ブリスベン コンベンション&エキシビジョン センター(ブリスベン、オーストラリア)
    • Year and Date
      2014-08-22
    • Related Report
      2014 Research-status Report
  • [Presentation] Physical mapping of black spot disease resistance/susceptibility-related genome region in Japanese pear (Pyrus pyrifolia) by BAC-FISH2014

    • Author(s)
      Yamamoto, M., Terakami, S., Takada, N., Yamamoto, T.
    • Organizer
      29th International Horticultural Congress 2014
    • Place of Presentation
      オーストラリア、ブリスベン
    • Related Report
      2013 Research-status Report
  • [Presentation] BAC-FISHによるニホンナシ黒斑病原因遺伝子領域の可視化2013

    • Author(s)
      山本雅史・寺上伸吾・高田教臣・山本俊哉
    • Organizer
      園芸学会平成25年度春季大会
    • Place of Presentation
      東京農工大学
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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