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Establishment of the index about the Interbreeding phenomenon by tracing the transposable elements in the insect genome

Research Project

Project/Area Number 24580080
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied entomology
Research InstitutionKyushu University (2015)
University of the Ryukyus (2012-2014)

Principal Investigator

Nakajima Yumiko  九州大学, アイソトープ総合センター 伊都地区実験室, 教授 (70244340)

Co-Investigator(Kenkyū-buntansha) MANO SHUHEI  統計数理研究所, 数理・推論研究系, 准教授 (20372948)
TESHIMA KOSUKE  九州大学, 理学系研究科, 助教 (20447593)
Co-Investigator(Renkei-kenkyūsha) YAGO MASAYA  東京大学, 総合研究博物館, 助教 (70571230)
MITA KAZUEI  (独)農業生物資源研究所, 上席研究員 (30159165)
Research Collaborator BANDO HISANORI  北海道大学, 農学研究院, 教授 (20189731)
BANNO YUTAKA  九州大学, 連合農学研究院, 准教授 (50192711)
YUKUHIRO KENJI  (独)農業生物資源研究所, 主席研究員 (50343992)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords雑種 / 転移因子 / カイコ、クワコ / mariner-like element / MLE / BmTNML 座位 / 28SrRNA遺伝子 / R1, R2 / CIM / Bmmar2 / クワコ / カイコ / インドクワコ / R1, R2レトロトランスポゾン / Bombyx mori (カイコ) / B. huttoni (クワコ) / B. mandarina (インドクワコ) / non-coding RNA / GC含量 / Bombyx mandarina / Bombyx huttoni / クワコ (台湾、韓国) / インドクワコ(インド) / CIM (Cecropia-ITR-MLE) / レトロトランスポゾンR1Bm, R2Bm
Outline of Final Research Achievements

As domesticated silkworms (Bombyx mori) are capable of mating with wild silkworms (Bombyx mandarina), it is possible to create artificial hybrids, but these two species of hybrid systems in nature are not considered to be capable of surviving. In this study, we aimed to establish a simple judgment method of hybrid individuals by focusing on the transposable elements in the genomes. First, we succeeded in to estimate the insertion order and the age of several kinds of transposable elements that were inserted into the same position on the genomes of the B. mori and B. mandarina, by using the nucleotide sequence data of both species in this region. Next, we suggested that it was effective in hybrid determination to trace the unit(tripartite structure of transposable elements found only in silkworms) of the interbreeding and the generations thereafter at the above-mentioned position, the rR2Bm profiles that were inserted in a sequence-specific manner into the rRNA genes in mandarina.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (9 results)

All 2015 2014 2013 2012

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 1 results)

  • [Journal Article] A novel cluster of mariner-like elements belonging to mellifera subfamily from spiders and insects: implications of recent horizontal transfer on the South-West Islands of Japan.2014

    • Author(s)
      Yamada, K., Kawanishi, Y., Yamada, A., Tokuda, G., Gurung, R.D., Sasaki, T., Nakajima, Y., Maekawa, H.
    • Journal Title

      Genetica

      Volume: 142(2) Issue: 2 Pages: 149-160

    • DOI

      10.1007/s10709-014-9762-9

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A novel cluster of mariner-like elements belonging to mellifera subfamily from spiders and insects: implications of recent horizontal transfer on the South-West Islands of Japan.2014

    • Author(s)
      Kaori Yamada, Yuichi Kawanishi, Akinori Yamada, Gaku Tokuda, Raj Deep Gurung, Takeshi Sasaki, Yumiko Nakajima, Hideaki Maekawa
    • Journal Title

      Genetica

      Volume: 142 (2) Pages: 149-160

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Biogeography revealed by Mariner-like transposable element sequences via a Bayesian coalescent approach2013

    • Author(s)
      Shigeki Nakagome
    • Journal Title

      Journal of Molecular Evolution

      Volume: 77(3) Issue: 3 Pages: 64-69

    • DOI

      10.1007/s00239-013-9581-0

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mos1 transposon-based transformation of fish cell lines using baculoviral vectors2013

    • Author(s)
      Masako Yokoo、Ryosuke Fujita、Yumiko Nakajima、Mamoru Yoshimizu、Hisae Kasai、Shin-ichiro Asano, Hironori Bando
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 439(1) Issue: 1 Pages: 18-22

    • DOI

      10.1016/j.bbrc.2013.08.037

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 日本産クワコ(Bombyx mandarina)の北陸から九州および周辺島嶼におけるミトコンドリアCO1ハプロタイプの推移2015

    • Author(s)
      行弘研司、河本夏雄、冨田秀一 郎、阪口洋樹、伊藤雅信、中島 裕美子
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学(川内北キャンパス)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 家畜感染症に関する数理疫学モデルの構築と防疫情報システムの設計2014

    • Author(s)
      平田哲兵, 大松 勉, 中島裕美子, 辰己賢一, 水谷哲也, 玉城史朗
    • Organizer
      電子情報通信学会
    • Place of Presentation
      機械振興会館(東京都)
    • Year and Date
      2014-11-06 – 2014-11-07
    • Related Report
      2014 Research-status Report
  • [Presentation] 挿入座位を特定したマリナー様転移因子(mariner-like elements; MLEs)の配列比較に基づく日本産クワコの系統解析2013

    • Author(s)
      川西祐一, 前川秀彰, 伴野豊, 中島裕美子
    • Organizer
      日本蚕糸学会九州支部研究発表会
    • Place of Presentation
      久米島博物館
    • Related Report
      2013 Research-status Report
  • [Presentation] Ancient mariner transposon inserted by some other transposable elements at different period in the genome of domesticated Bombyx mori and the most related species B. mandarina2012

    • Author(s)
      Yumiko Nakajima, Shigeki Nakagome, Shuhei Mano
    • Organizer
      BIT's 3rd World DNA and Genome Day-2012
    • Place of Presentation
      Qujiang International Conference Center, Xi'an, China,
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Evolution and biogeography of Bombyx mandarina compared with the domesticated mori revealed by Bayesian inference of DNA sequences data from some transposons including mariner-like elements (MLEs)2012

    • Author(s)
      Yumiko Nakajima, Shigeki Nakagome, Shuhei Mano
    • Organizer
      XXIV International Congress of Entomology
    • Place of Presentation
      Daegu Exhibition & Convention Center, Daegu, Korea
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2022-12-28  

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