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Structural and functional analysis of novel cold-adapted carbohydrate hydrolases from Eisenia fetida and application of their enzymes

Research Project

Project/Area Number 24580481
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Boundary agriculture
Research InstitutionOsaka Prefecture University

Principal Investigator

UEDA mitsuhiro  大阪府立大学, 生命環境科学研究科(系), 准教授 (50254438)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords糖質分解酵素 / 低温適応性 / ミミズ / キチナーゼ / アミラーゼ / X線結晶構造解析 / セルラーゼ / 低温適応酵素 / クローニング / 発現 / 糖質加水分解酵素
Outline of Final Research Achievements

The present study identified a cold adapted cellulase named endo-1,4-beta-glucanase (EF-EG2) from the earthworm Eisenia fetida. The gene was cloned in the cold-shock expression vector and functionally expressed in Escherichia coli. The gene consists of 1368 bp encoding 456 amino acid residues. Purified recombinant EF-EG2 hydrolyzed soluble cellulose (carboxymethyl cellulose), but not insoluble (powdered cellulose) or crystalline (Avicel) cellulose substrates. The enzyme exhibited significant activity at 10oC (38% of the activity at optimal 40oC) and was stable at pH 5.0~9.0, with an optimum pH of 5.5. This new cold-adapted cellulase could potentially improve the cost effectiveness of biofuel production. The overall structure of EF-EG2 has an (alpha/alpha)6 barrel fold which contains a putative activesite cleft and a negatively charged surface. This structural information helps us understand the catalytic and cold adaptation mechanisms of EF-EG2.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (32 results)

All 2015 2014 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (27 results) (of which Invited: 1 results) Remarks (2 results)

  • [Journal Article] Cloning and expression of the cold-adapted endo-1,4-glucanase gene from Eisenia fetida2013

    • Author(s)
      Mitsuhiro Ueda, Akihiro Ito, Masami Nakazawa, Kazutaka Miyatake, Minoru Sakaguchi , Kuniyo Inouye
    • Journal Title

      Carbohydrate Polymers

      Volume: 101 Pages: 511-516

    • DOI

      10.1016/j.carbpol.2013.09.057

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of endo-1,4-β-glucanase from Eisenia fetida2013

    • Author(s)
      Takao Arimori, Akihiro Ito, Masami Nakazawa, Mitsuhiro Ueda and Taro Tamada
    • Journal Title

      J. Synchrotron Rad.

      Volume: 20 Issue: 6 Pages: 884-889

    • DOI

      10.1107/s0909049513021110

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystal structures of the catalytic domain of a novel glycohydrolas e family 23 chitinase from Ralstonia sp. A-471 reveals a unique a rrangement of the catalytic residues for inverting chitin hydrolysis.2013

    • Author(s)
      Arimori, T., Kawamoto, N., Shinya, S., Okazaki, N., Nakazawa, M., Miyatake, K., Fukamizo, T., Ueda, M., Tamada, T.
    • Journal Title

      The journal of biological chemistry

      Volume: 288 Issue: 26 Pages: 18696-706

    • DOI

      10.1074/jbc.m113.462135

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Cloning and Expression of chitinase gene from Eisenia fetida2015

    • Author(s)
      Ueda, Mistuhiro; Shioyama, Takeshi; Nakazawa, Masami; Sakamoto, Tatsuji; Sakaguchi, Minoru
    • Organizer
      ICCC / EUCHIS 2015
    • Place of Presentation
      ドイツ_ミュンスター
    • Year and Date
      2015-08-30 – 2015-09-02
    • Related Report
      2014 Annual Research Report
  • [Presentation] ミミズ(Eisenia fetida)由来のキチナーゼ遺伝子のクローニングと異種宿主発現2015

    • Author(s)
      上田光宏,塩山岳志,中澤昌美,阪本龍司,坂口実
    • Organizer
      2015年度日本キチン・キトサン学会大会
    • Place of Presentation
      東海大学熊本校舎
    • Year and Date
      2015-08-20 – 2015-08-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] Ralstonia sp. A-471由来の新奇キチナーゼのキチンバインディングドメインの役割2015

    • Author(s)
      櫻井俊輔,中澤昌美,阪本龍司,玉田太郎,深田はるみ,上田光宏
    • Organizer
      2015年度日本キチン・キトサン学会大会
    • Place of Presentation
      東海大学熊本校舎
    • Year and Date
      2015-08-20 – 2015-08-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] カサゴ胃由来キチナーゼの大腸菌による発現2015

    • Author(s)
      松永、柿崎、池田、福島、上田光宏、松宮政弘
    • Organizer
      2015年度日本キチン・キトサン学会大会
    • Place of Presentation
      東海大学熊本校舎
    • Year and Date
      2015-08-20 – 2015-08-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 冬虫夏草由来のプロテアーゼに関する研究2014

    • Author(s)
      上田光宏
    • Organizer
      日本菌学会西日本支部大会
    • Place of Presentation
      I-site なんば
    • Year and Date
      2014-11-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] シマミミズ(Eisenia fetida)由来の低温適応性 endo-1,4-beta-glucanase (EF-EG2)の構造と機能の解析2014

    • Author(s)
      上田光宏,福原宏章,伊藤彰紘,中澤昌美,阪本龍司,有森貴夫,玉田太郎
    • Organizer
      平成26年度生化学会大会
    • Place of Presentation
      京都_国立京都国際会館
    • Year and Date
      2014-10-15 – 2015-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] コナサナギタケ(Paecilomyces farinosus)由来のプロテアーゼの精製・性質と遺伝子クローニング2014

    • Author(s)
      上田光宏, 森本和樹,中澤昌美,阪本龍司,楠田瑞穂,坂口 実,大内謙二
    • Organizer
      日本きのこ学会25周年記念大会
    • Place of Presentation
      京都大学百周年時計台記念館
    • Year and Date
      2014-09-10 – 2014-09-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] マツタケ菌糸の香気成分生成2014

    • Author(s)
      楠田 瑞穂,寺下 隆夫,上田 光宏
    • Organizer
      食品酵素化学研究会第14回学術講演会
    • Place of Presentation
      I-site なんば
    • Year and Date
      2014-08-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] 冬虫夏草(クモタケ)由来のプロテアーゼに関する研究2014

    • Author(s)
      上田 光宏,山本直美,中澤昌美,楠田瑞穂,大内謙二,井上國世
    • Organizer
      食品酵素化学研究会第14回学術講演会
    • Place of Presentation
      I-site なんば
    • Year and Date
      2014-08-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] シマミミズ(Eisenia fetida) 由来のキチナーゼ遺伝子のクローニングと発現2014

    • Author(s)
      塩山岳志,中澤昌美,阪本龍司,坂口実,上田光宏
    • Organizer
      第28回キチン・キトサンシンポジウム
    • Place of Presentation
      東京_順天堂大学
    • Year and Date
      2014-08-07 – 2014-08-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] シマミミズ(Eisenia fetida) 由来のβ-1,3グルカナーゼ遺伝子のクローニングと発現2014

    • Author(s)
      小根森雄太,中澤昌美,阪本龍司,坂口実,上田光宏
    • Organizer
      第28回キチン・キトサンシンポジウム
    • Place of Presentation
      東京_順天堂大学
    • Year and Date
      2014-08-07 – 2014-08-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] アミスギタケの子実体形成に及ぼすアミノ酸の添加効果2014

    • Author(s)
      楠田瑞穂・上田光宏・白坂憲章・寺下隆夫
    • Organizer
      日本菌学会大会
    • Place of Presentation
      サイエンスヒルズこまつ
    • Year and Date
      2014-06-13 – 2014-06-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] 低温適応性セルラーゼの結晶構造解析2014

    • Author(s)
      玉田太郎,有森貴夫,福原宏章,伊藤彰鉱,上田光宏
    • Organizer
      物構研サイエンスフェスタ2013
    • Place of Presentation
      つくば国際会議場エポルカ
    • Related Report
      2013 Research-status Report
  • [Presentation] ミミズ由来低温適応酵素の構造と機能2014

    • Author(s)
      上田光宏
    • Organizer
      食品酵素化学研究会
    • Place of Presentation
      大阪府立大学 I-site難波
    • Related Report
      2013 Research-status Report
  • [Presentation] Crystal structure of endo-1,4-[beta]-glucanase from Eisenia fetida2013

    • Author(s)
      有森貴夫,伊藤彰紘,中澤昌美,上田光宏,玉田太郎
    • Organizer
      蛋白質科学会大会
    • Place of Presentation
      とりぎん文化会館 鳥取
    • Related Report
      2013 Research-status Report
  • [Presentation] Crystal structure of 1, 4-β-endoglucanase from E. foetida2013

    • Author(s)
      Taro Tamada, Akihiro Itoh, Masami Nakazawa, Mitsuhiro Ueda, Takao Arimori
    • Organizer
      4th International Symposium on Diffraction Structural Biology
    • Place of Presentation
      名古屋
    • Related Report
      2013 Research-status Report
  • [Presentation] Functional analysis of a novel Family GH-23 chitinase from thermophilic bacterium Ralstonia sp. A-4712013

    • Author(s)
      M. Ueda, N. Kawamoto, M. Nakazawa, K. Miyatake, S. Nishimura, H. Fukada, T. Arimori, T. Ohnuma, T. Tamada, T. Fukamizo
    • Organizer
      11th International Conference of the European Chitin Society
    • Place of Presentation
      ポルトガル(ポルト)
    • Related Report
      2013 Research-status Report
  • [Presentation] GH ファミリー23に属する新規キチナーゼの構造生物学的研究2013

    • Author(s)
      有森貴夫,川本乃理子,新家粧子,岡崎伸夫,中澤昌美,宮武和孝,深溝慶,上田光宏,玉田太郎
    • Organizer
      食品酵素化学研究会
    • Place of Presentation
      大阪府立大学 I-site難波
    • Related Report
      2013 Research-status Report
  • [Presentation] Cloning and expression of endo-1,4-beta-glucanase from Eisenia fetida2013

    • Author(s)
      H.fukuhara, A. Ito, T. Arimori, M. Nakazawa, T. Sakamoto, S, Akazawa, T. Tamada, K. Inouye, M. Ueda
    • Organizer
      第27回日本キチン・キトサンシンポジウム,第10回アジア太平洋キチン・キトサンシンポジウム
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] Cloning and expression of alpha-amylase gene from Eisenia fetida2013

    • Author(s)
      Y. Yamanouchi, M. Nakazawa, T. Sakamoto, S, Akazawa, K. Inouye, M. Ueda
    • Organizer
      第27回日本キチン・キトサンシンポジウム,第10回アジア太平洋キチン・キトサンシンポジウム
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] Cloning and heterologous expression of chitinase gene from Eisenia fetida2013

    • Author(s)
      T.shioyama, M. Nakazawa, T. Sakamoto, S, Akazawa, K. Inouye, M. Ueda
    • Organizer
      第27回日本キチン・キトサンシンポジウム,第10回アジア太平洋キチン・キトサンシンポジウム
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] Cloning of CMCase gene from Bellamya chinensis laeta2013

    • Author(s)
      K. Kawasaki, M. Nakazawa, T. Sakamoto, M. Sakaguchi, K. Inouye, M. Ueda
    • Organizer
      第27回日本キチン・キトサンシンポジウム,第10回アジア太平洋キチン・キトサンシンポジウム
    • Place of Presentation
      米子コンベンションセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] 低温適応能を有する糖質分解酵素の構造と機能の解析2013

    • Author(s)
      上田光宏
    • Organizer
      飯島藤十郎記念食品科学振興財団_第26回学術講演会
    • Place of Presentation
      神田学士会館
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Crystal structure of 1, 4-β-endoglucanase from E. foetida2013

    • Author(s)
      Taro Tamada, Akihiro Itoh, Masami Nakazawa, Mitsuhiro Ueda, Takao Arimori
    • Organizer
      4th International Symposium on Diffraction Structural Biology
    • Place of Presentation
      名古屋市中小企業振興会館(吹上ホール)
    • Related Report
      2012 Research-status Report
  • [Presentation] シマミミズ由来 1, 4-β-エンドグルカナーゼの結晶構造解析2013

    • Author(s)
      有森 貴夫,伊藤彰紘,中澤昌美,上田 光宏,玉田太郎
    • Organizer
      蛋白質科学会大会
    • Place of Presentation
      とりぎん文化会館(鳥取)
    • Related Report
      2012 Research-status Report
  • [Presentation] マルタニシ (Bellamya chinensis laeta) 由来のCMCaseの精製・性質と遺伝子クローニング2012

    • Author(s)
      川﨑恵子,上田光宏,丸山智史,中澤昌美,宮武和孝,坂口実,井上國世
    • Organizer
      日本農芸化学会関西支部大会
    • Place of Presentation
      京都学園大学
    • Related Report
      2012 Research-status Report
  • [Presentation] ミミズ由来の低温適応性糖質分解酵素の酵素化学的性質と遺伝子クローニング2012

    • Author(s)
      上田光宏,伊藤彰紘 ,中澤昌美,宮武和孝,坂口 実,井上國世
    • Organizer
      日本キチン・キトサンシンポジウム
    • Place of Presentation
      北海道大学
    • Related Report
      2012 Research-status Report
  • [Remarks] 低温適応性を有する新規セルロース分解酵素

    • URL

      http://www.iao.osakafu-u.ac.jp/ipbc/fea2010_postor/ueda.pdf

    • Related Report
      2014 Annual Research Report
  • [Remarks] 低温適応性を有する新規セルロース分解酵素

    • URL

      http://www.kinkibio.com/seeds/images/seeds-24.pdf

    • Related Report
      2014 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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