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Structural biological studies on the sialic acid-binding mechanism of R-type lectin mutant

Research Project

Project/Area Number 24580500
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

HEMMI Hikaru  独立行政法人農業・食品産業技術総合研究機構, 食品総合研究所食品分析研究領域, 上席研究員 (70353993)

Co-Investigator(Kenkyū-buntansha) KUNO Atsushi  独立行政法人産業技術総合研究所, 糖鎖創薬技術研究センター, 上級主任研究員 (50302287)
HIRABAYASHI Jun  独立行政法人産業技術総合研究所, 幹細胞工学研究センター, 首席研究員 (40156691)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords蛋白質 / 糖鎖 / NMR / レクチン / 糖認識ドメイン
Outline of Final Research Achievements

We performed the nuclear magnetic resonance analysis of the sialic acid-binding mechanism of the novel sialic acid-binding lectin (SRC) produced from the C-terminal domain of the novel R-type lectin from the earthworm (EW29Ch) by natural evolution-mimicry. The results showed that in the 6’-sialyllactose-bound state SRC has two conformations different from both the conformation in the sugar-free state and that in the lactose-bound state. Further, the internal motion of the loop region in subdomain γ of SRC remarkably changed from that of the corresponding region in subdomain γ of the wild type lectin EW29Ch, indicating that the internal motion change is important in the sialic acid-binding mechanism of SRC.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (8 results)

All 2014 2013 2012

All Journal Article (2 results) (of which Acknowledgement Compliant: 1 results,  Peer Reviewed: 1 results) Presentation (6 results)

  • [Journal Article] NMR analysis of carbohydrate-binding interactions in solution: an approach using analysis of saturation transfer difference NMR spectroscopy2014

    • Author(s)
      Hikaru Hemmi
    • Journal Title

      Lectins, Methods in Molecular Biology

      Volume: 1200 Pages: 501-509

    • DOI

      10.1007/978-1-4939-1292-6_41

    • ISBN
      9781493912919, 9781493912926
    • Related Report
      2014 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] NMR structure and dynamics of the C-terminal domain of R-type lectin from the earthworm Lumbricus terrestris2013

    • Author(s)
      逸見 光、久野 敦、平林 淳
    • Journal Title

      FEBS Journal

      Volume: 280 Issue: 1 Pages: 70-82

    • DOI

      10.1111/febs.12050

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 遊離状態および糖結合状態におけるミミズ由来R型レクチン改変体のシアル酸糖結合メカニズムに関するNMR解析2014

    • Author(s)
      逸見 光、久野 敦、海野幸子、平林 淳
    • Organizer
      第53回NMR討論会
    • Place of Presentation
      大阪大学コンベンションセンター(大阪府吹田市)
    • Year and Date
      2014-11-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] NMR analysis of a sialic acid-binding mutant from an R-type lectin in the sugar-free state or in the sugar-bound states2014

    • Author(s)
      逸見 光、久野 敦、平林 淳
    • Organizer
      26th International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Hyatt Regency Dallas(アメリカ合衆国テキサス州)
    • Year and Date
      2014-08-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] NMR studies on a novel sialic acid-binding lectin mutant from the C-terminal domain of an R-type lectin from earthworm2013

    • Author(s)
      逸見 光、久野 敦、平林 淳
    • Organizer
      5th Asia-Pacific NMR Symposium
    • Place of Presentation
      Brisbane Convention and Exhibition Centre(オーストラリア)
    • Related Report
      2013 Research-status Report
  • [Presentation] 分子進化工学的手法によるミミズ由来R型レクチン改変体のシアル酸糖結合メカニズムに関するNMR解析2013

    • Author(s)
      逸見 光、久野 敦、海野幸子、平林 淳
    • Organizer
      第52回NMR討論会
    • Place of Presentation
      石川県立音楽堂(石川県)
    • Related Report
      2013 Research-status Report
  • [Presentation] NMR studies on the complex of the C-terminal domain of R-type lectin from earthworm with lactose2012

    • Author(s)
      逸見 光、久野 敦、平林 淳
    • Organizer
      25th International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Centre(フランス)
    • Related Report
      2012 Research-status Report
  • [Presentation] ミミズ由来R型レクチンC末端ドメインの異なったラクトース結合状態でのNMR解析2012

    • Author(s)
      逸見 光、久野 敦、海野幸子、平林 淳
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインクあいち(愛知県)
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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