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In silico drug design of SHIP2 inhibitor as a novel therapeutic agent for diabetes.

Research Project

Project/Area Number 24590058
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical pharmacy
Research InstitutionShowa University (2013-2014)
Kitasato University (2012)

Principal Investigator

GOUDA Hiroaki  昭和大学, 薬学部, 教授 (60276160)

Co-Investigator(Renkei-kenkyūsha) HIRONO Shuichi  北里大学, 薬学部, 教授 (30146328)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords分子設計 / ドッキング計算 / 結合自由エネルギー / SHIP2 / 阻害剤 / 糖尿病 / インスリン / SBDD / ドラッグデザイン / 分子ドッキング計算 / 結合自由エネルギー計算 / 分子動力学シミュレーション
Outline of Final Research Achievements

SH2 domain-containing inositol 5’-phosphatase 2 (SHIP2) plays as an endogenous negative regulator of insulin signaling. Therefore, SHIP2 is considered to have great potential as a drug target for treating obesity and type 2 diabetes. We recently identified a novel SHIP2 inhibitor, N-[4-(4-chlorobenzyloxy)pyridin-2-yl]-2-(2,6-difluorophenyl)acetamide (CPDA). The binding mode of CPDA with SHIP2 was first investigated based on molecular docking calculation. CPDA was suggested to form a total of four hydrogen bonds with L538, K541, S564, and R571 of SHIP2. Aromatic rings of CPDA were also found to form hydrophobic interactions with side alkyl chains of T532, I534, L538, K541, T563, and R571. We next designed derivatives of CPDA based on binding free energy calculation. Derivatives with an additional monosaccharide such as galactose were expected to possess more potent inhibitory activity against SHIP2.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (22 results)

All 2015 2014 2013 2012 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (11 results) (of which Invited: 1 results)

  • [Journal Article] Three-dimensional quantitative structure-activity relationship analysis for human pregnane X Receptor for the prediction of CYP3A4 induction in human hepatocytes: structure-based comparative molecular field analysis.2015

    • Author(s)
      Koichi Handa, Izumi Nakagome, Noriyuki Yamaotsu, Hiroaki Gouda, Shuichi Hirono.
    • Journal Title

      Journal of Pharmaceutical Sciences

      Volume: 104 Issue: 1 Pages: 223-232

    • DOI

      10.1002/jps.24235

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In silico and pharmacological screenings identify novel serine racemase inhibitors.2014

    • Author(s)
      Hisashi Mori, Ryogo Wada, Jie Li, Tetsuya Ishimoto, Mineyuki Mizuguchi, Takayuki Obita, Hiroaki Gouda, Shuichi Hirono, Naoki Toyooka.
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 24 Issue: 16 Pages: 3732-3735

    • DOI

      10.1016/j.bmcl.2014.07.003

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and synthesis of quinolinopropellane derivatives with selective δ opioid receptor agonism.2014

    • Author(s)
      Hiroshi Nagase, Ryo Nakajima, Naoshi Yamamoto, Shigeto Hirayama, Takashi Iwai, Toru Nemoto, Hiroaki Gouda, Shuichi Hirono, Hideaki Fujii.
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 24 Issue: 13 Pages: 2851-2854

    • DOI

      10.1016/j.bmcl.2014.04.098

    • NAID

      120007136687

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] <i>In Silico</i> Study on the Inhibitory Interaction of Drugs with Wild-type CYP2D6.1 and the Natural Variant CYP2D6.172014

    • Author(s)
      Koichi Handa, Izumi Nakagome, Noriyuki Yamaotsu, Hiroaki Gouda, Shuichi Hirono
    • Journal Title

      Drug Metabolism and Pharmacokinetics

      Volume: 29 Issue: 1 Pages: 52-60

    • DOI

      10.2133/dmpk.DMPK-13-RG-044

    • NAID

      130004463344

    • ISSN
      1347-4367, 1880-0920
    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Conformational folding of mycobacterial methoxy- and ketomycolic acids facilitated by α-methyl trans-cyclopropane groups rather than cis-cyclopropane units2013

    • Author(s)
      Masumi Villeneuve, Mizuo Kawai, Kieko Horiuchi, Motoko Watanabe, Yutaka Aoyagi, Yukio Hitotsuyanagi, Koichi Takeya, Hiroaki Gouda, Shuichi Hirono, David E. Minnikin
    • Journal Title

      Microbiology

      Volume: 159 Issue: Pt_11 Pages: 2405-2415

    • DOI

      10.1099/mic.0.068866-0

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor2013

    • Author(s)
      Hirose T, Maita N, Taniguchi H, Sharpless KB, Omura S, Sunazuka T
    • Journal Title

      Proc.Natl.Acad.Sci. USA.

      Volume: 110 Issue: 40 Pages: 15892-15897

    • DOI

      10.1073/pnas.1315049110

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Human acidic mammalian chitinase as a novel target for anti-asthma drug design using in silico screening2013

    • Author(s)
      Masaki Wakasugi, Hiroaki Gouda, Tomoyasu Hirose, Akihiro Sugawara, Tsuyoshi Yamamoto, Kazuro Shiomi, Toshiaki Sunazuka, Satoshi Omura, Shuichi Hirono
    • Journal Title

      Bioorg Med Chem

      Volume: 21 Issue: 11 Pages: 3214-3220

    • DOI

      10.1016/j.bmc.2013.03.047

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rational design and synthesis of 4-substituted 2-pyridin-2-ylamides with inhibitory effects on SH2 domain-containing inositol 5'-phosphatase 2 (SHIP2).2013

    • Author(s)
      Ichihara Y, Fujimura R, Tsuneki H, Wada T, Okamoto K, Gouda H, Hirono S, Sugimoto K, Matsuya Y, Sasaoka T, Toyooka N.
    • Journal Title

      Eur J Med Chem.

      Volume: 62 Pages: 649-660

    • DOI

      10.1016/j.ejmech.2013.01.014

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Essential structure of opioid κ receptor agonist nalfurafine for binding to the κ receptor 3: Synthesis of decahydro(iminoethano)phenanthrene derivatives with an oxygen functionality at the 3-position and their pharmacologies2012

    • Author(s)
      Fujii, H.; Imaide, S.; Hirayama, S.; Nemoto, T.; Gouda, H.; Hirono, S.; Nagase, H.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 22 Issue: 24 Pages: 7711-7714

    • DOI

      10.1016/j.bmcl.2012.09.101

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Synthesis of new opioid derivatives with a propellane skeleton and their pharmacologies: Part 3, novel propellane derivatives with pentacyclic skeletons.2012

    • Author(s)
      4. Hideaki Fujii, Ryo Nakajima, Junko Akiyama, Naoshi Yamamoto, Shigeto Hirayama, Toru Nemoto, Hiroaki Gouda, Shuichi Hirono, Hiroshi Nagase.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 22 Issue: 24 Pages: 7697-7701

    • DOI

      10.1016/j.bmcl.2012.09.102

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Synthesis of new opioid derivatives with a propellane skeleton and their pharmacology. Part 2 : Propellane derivatives with an amide side chain2012

    • Author(s)
      Hiroshi Nagase, Junko Akiyama, Ryo Nakajima, Shigeto Hirayama, Toru Nemoto, Hiroaki Gouda, Shuichi Hirono, Hideaki Fujii
    • Journal Title

      Bioorg. Med. Chem. Lett

      Volume: 22(8) Issue: 8 Pages: 2775-2779

    • DOI

      10.1016/j.bmcl.2012.02.082

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] インスリンシグナル増強作用を示す新規化合物CPDAのSHIP2阻害能評価2015

    • Author(s)
      梅田知伸、山田彩華、田中信忠、小澤新一郎、広野修一、笹岡利安、豊岡尚樹、合田浩明
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      デザイン・クリエイティブセンター神戸(兵庫県、神戸市)
    • Year and Date
      2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 新規糖尿病治療薬としての選択的SHIP2阻害剤のin silico創薬研究2015

    • Author(s)
      小澤新一郎, 合田浩明, 広野修一
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸サンボーホール(兵庫県、神戸市)
    • Year and Date
      2015-03-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ドッキング計算を用いた薬剤性過敏症候群を引き起こすレクチゾールとHLAの結合様式解析2015

    • Author(s)
      日下部吉男, 渡辺秀晃, 莚田泰誠, 合田浩明
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸サンボーホール(兵庫県、神戸市)
    • Year and Date
      2015-03-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 新規糖尿病治療薬としてのSHIP2選択的阻害剤のin silico創薬研究2014

    • Author(s)
      小澤新一郎, 合田浩明, 広野修一
    • Organizer
      第42回構造活性相関シンポジウム
    • Place of Presentation
      くまもと森都心プラザ(熊本県、熊本市)
    • Year and Date
      2014-11-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] 8-Hydroxy-2-imino-2H-chromene-3-carboxamide骨格を有するカルボニル還元酵素(CBR1)阻害剤の構造活性相関2014

    • Author(s)
      宮城菜未希,胡大イ,遠藤智史,荒井裕貴,松永俊之,五十里彰,桑田一夫,原明,合田浩明,豊岡尚樹
    • Organizer
      第42回構造活性相関シンポジウム
    • Place of Presentation
      くまもと森都心プラザ(熊本県、熊本市)
    • Year and Date
      2014-11-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒト酸性キチナーゼを標的とした新規喘息治療薬開発を目指したイン・シリコ創薬研究2012

    • Author(s)
      若杉昌輝, 合田浩明, 廣瀬友靖, 菅原章公, 山本剛, 塩見和朗, 砂塚敏明, 大村智, 広野修一
    • Organizer
      第40回構造活性相関シンポジウム
    • Place of Presentation
      岡崎
    • Related Report
      2012 Research-status Report
  • [Presentation] イン・シリコ創薬技術に基づいたヒトセリンラセマーゼ阻害剤の創製研究2012

    • Author(s)
      合田浩明, 和田亮吾, 李杰, 帯田孝之, 水口峰之, 森寿, 豊岡尚樹, 広野修一
    • Organizer
      第40回構造活性相関シンポジウム
    • Place of Presentation
      岡崎
    • Related Report
      2012 Research-status Report
  • [Presentation] 新規糖尿病治療薬としてのSHIP2阻害剤のin silico創薬研究

    • Author(s)
      小澤新一郎、中作菜穂、合田浩明、広野修一
    • Organizer
      日本薬学会第134年会
    • Place of Presentation
      熊本
    • Related Report
      2013 Research-status Report
  • [Presentation] 新規インスリン抵抗性改善に基づく2型糖尿病治療薬の創製

    • Author(s)
      高原理行,市原克則,和田努,恒枝宏史,笹岡利安,広野修一,梅田知伸,田中信忠,合田浩明,豊岡尚樹
    • Organizer
      日本薬学会第134年会
    • Place of Presentation
      熊本
    • Related Report
      2013 Research-status Report
  • [Presentation] ジアシルグリセロールアシル基転移酵素-1阻害剤のLigand-Based Drug Design

    • Author(s)
      若杉昌輝,合田浩明,平野遼太郎, 小林健一, 古源寛,広野修一
    • Organizer
      第41回構造活性相関シンポジウム
    • Place of Presentation
      西宮
    • Related Report
      2013 Research-status Report
  • [Presentation] イン・シリコ創薬技術に基づいたStructure Based Drug Designの実際~新規キチナーゼ阻害剤開発に有用なイン・シリコ分子設計法の確立~

    • Author(s)
      合田浩明
    • Organizer
      日本薬学会関東支部 第37回学術講演会
    • Place of Presentation
      渋谷
    • Related Report
      2012 Research-status Report
    • Invited

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Published: 2013-05-31   Modified: 2019-07-29  

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