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Identification of conversion of cells by proteomics analysis

Research Project

Project/Area Number 24590353
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field General medical chemistry
Research InstitutionKyoto University

Principal Investigator

NAKAGAWA Masato  京都大学, iPS細胞研究所, 講師 (10379539)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords質量分析 / 幹細胞 / iPS細胞 / 定量 / 初期化 / ES細胞 / プロテオミクス / プロテオーム解析 / 転写因子 / 分画
Outline of Final Research Achievements

We have been studying for the purpose of capturing the expression changes of proteins during the conversion process of the cell. We proceeded improvements in identification techniques for proteins using a mass spectrometer (MS). First, using a meter-long monolithic column in order to improve the separation of the sample. Second, cells were fractionated into the cell membrane, cytoplasm, nuclear. We were able to achieve an increase in the number of protein that can be finally identified. Furthermore, by combining with labeling for quantitative comparing between samples, it was possible to carry out the establishment of accurately quantifying technology less samples with high sensitivity. Was subjected to analysis of human iPS cells and the original fibroblasts using this technique and have enabled the identification of gene which identification was difficult until now.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (16 results)

All 2015 2014 2013 2012 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Invited: 2 results) Remarks (3 results)

  • [Journal Article] X-linked severe combined immunodeficiency (X-SCID) rats for xeno-transplantation and behavioral evaluation2015

    • Author(s)
      Bumpei Samata, Tetsuhiro Kikuchi, Yoshifumi Miyawaki, Asuka Morizane, Tomoji Mashimo, Masato Nakagawa, Keisuke Okita, Jun Takahashi
    • Journal Title

      Journal of Neuroscience Methods

      Volume: 243 Pages: 68-77

    • DOI

      10.1016/j.jneumeth.2015.01.027

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Derivation of mesenchymal stromal cells from pluripotent stem cells through a neural crest lineage using small molecule compounds with defined media.2014

    • Author(s)
      Fukuta M, Nakai Y, Kirino K, Nakagawa M, Sekiguchi K, Nagata S, Matsumoto Y, Yamamoto T, Umeda K, Heike T, Okumura N, Koizumi N, Sato T, Nakahata T, Saito M, Otsuka T, Kinoshita S, Ueno M, Ikeya M, Toguchida J.
    • Journal Title

      PLOS ONE

      Volume: 9 Issue: 12 Pages: e112291-e112291

    • DOI

      10.1371/journal.pone.0112291

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A novel efficient feeder-free culture system for the derivation of human induced pluripotent stem cells.2014

    • Author(s)
      Nakagawa M, Taniguchi Y, Senda S, Takizawa N, Ichisaka T, Asano K, Morizane A, Doi D, Takahashi J, Nishizawa M, Yoshida Y, Toyoda T, Osafune K, Sekiguchi K, YamanakaS.
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 3594-3594

    • DOI

      10.1038/srep03594

    • NAID

      120005357344

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isolation of human induced pluripotent stem cell-derived dopaminergic progenitors by cell sorting for successful transplantation2014

    • Author(s)
      Daisuke Doi, Bumpei Samata, Mitsuko Katsukawa, Tetsuhiro Kikuchi, Asuka Morizane, Yuichi Ono, Kiyotoshi Sekiguchi, Masato Nakagawa, Malin Parmar, Jun Takahashi
    • Journal Title

      Stem Cell Reports

      Volume: 2 Issue: 3 Pages: 337-350

    • DOI

      10.1016/j.stemcr.2014.01.013

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A chemical probe that labels human pluripotent stem cells2014

    • Author(s)
      Hirata N, Nakagawa M, Fujibayashi Y, Yamauchi K, Murata A, Minami I, Tomioka M, Kondo T, Kuo TF, Endo H, Inoue H, Sato S, Ando S, Kawazoe Y, Aiba K, Nagata K, Kawase E, Chang YT, Suemori H, Eto K, Nakauchi H, Yamanaka S, Nakatsuji N, Ueda K, Uesugi M
    • Journal Title

      Cell reports

      Volume: 6 Issue: 6 Pages: 1165-74

    • DOI

      10.1016/j.celrep.2014.02.006

    • NAID

      120005466668

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot nanoLC-MS/MS analysis with meter-scale monolithic silica columns2013

    • Author(s)
      山名涼太、岩崎未央、若林真樹、中川誠人、山中伸弥、石濱泰
    • Journal Title

      Journal of Proteome Research

      Volume: 12 Issue: 1 Pages: 214-221

    • DOI

      10.1021/pr300837u

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 転写産物および蛋白質の大規模発現量データを用いたヒト人工多能性幹細胞における転写後制御機能解析2014

    • Author(s)
      岩崎未央, 川原優香, 小野美幸, 石濱泰, 山中伸弥, 中川誠人
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Deep Subcellular Proteome Profiling of Human Induced Pluripotent Stem Cell by One-shot nanoLC-MS/MS Analyses with Meter-scale Monolithic Silica Columns.2013

    • Author(s)
      Iwasaki, M., Nakagawa, M., Ishihama, Y., and Yamanaka, S.
    • Organizer
      HUPO 12th world congress
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2013 Research-status Report
  • [Presentation] Establishment of human iPS cells under feeder-free conditions for clinical application2012

    • Author(s)
      Masato Nakagawa, Yukimasa Taniguchi, Nanako Takizawa, Ito Miyashita, Tomoko Ichisaka, Kiyotoshi Sekiguchi, and Shinya Yamanaka
    • Organizer
      日本分子生物学会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] プロテオーム解析からみたiPS細胞研究

    • Author(s)
      中川誠人
    • Organizer
      第5回薬学の未来を考える京都シンポジウム「オミオクス科学と細胞解析」
    • Place of Presentation
      京都大学薬学部記念講堂(京都)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] DNAからiPS細胞の謎を解く

    • Author(s)
      中川誠人
    • Organizer
      日本化学会科学教育協議会「高校生のための科学講座」「テーマ:遺伝子」
    • Place of Presentation
      静岡県立大学浜松キャンパス(静岡)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Novel feeder-free culture system for human ES/iPS cells

    • Author(s)
      Masato Nakagawa
    • Organizer
      The 7th Takeda Science Foundation Symposium on PharmaSciences iPS Cells in Drug Discovery & Development /CiRA International Symposium 2014
    • Place of Presentation
      武田薬品工業株式会社研修所(大阪)
    • Related Report
      2013 Research-status Report
  • [Presentation] 臨床応用可能なiPS細胞の培養技術の開発

    • Author(s)
      中川誠人
    • Organizer
      大阪大学蛋白質研究所セミナー「多能性幹細胞研究の最前線~培養技術から解析技術まで~」
    • Place of Presentation
      大阪大学蛋白質研究所(大阪)
    • Related Report
      2013 Research-status Report
  • [Remarks] 中川研究グループ ホームページ

    • URL

      http://www.cira.kyoto-u.ac.jp/nakagawa/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 中川研究グループホームページ

    • Related Report
      2013 Research-status Report
  • [Remarks] 中川研究グループホームページ

    • URL

      http://www.cira.kyoto-u.ac.jp/nakagawa/

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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