• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Clinical application of the rapid IT system for identifying pathogenic bacteria using the eukaryote-made Taq DNA polymerase

Research Project

Project/Area Number 24590682
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Laboratory medicine
Research InstitutionUniversity of Toyama

Principal Investigator

NIIMI HIDEKI  富山大学, 大学病院, 助教 (50401865)

Co-Investigator(Kenkyū-buntansha) KITAJIMA Isao  富山大学, 大学院医学薬学研究部(医学), 教授 (50214797)
NOTE Ryougou  富山大学, 大学病院, 臨床検査技師長 (60377364)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords敗血症 / 感染症 / 遺伝子検査 / PCR / 迅速検査 / 微生物 / 遺伝子
Outline of Final Research Achievements

We developed the novel IT system (Tm mapping method) for rapidly identifying the dominant bacteria in a clinical sample. Employing only seven primer sets, more than 100 bacterial species can be identified. Moreover, this method can be used to rapidly diagnose the absence of bacteria in clinical samples.
We tested the Tm mapping method using 200 whole blood samples obtained from patients with suspected sepsis, 85% (171/200) of which matched the culture results based on the detection level. A total of 130 samples were negative according to the Tm mapping method, 98% (128/130) of which were also negative based on the culture method. Meanwhile, 70 samples were positive according to the Tm mapping method, and of the 59 suitable for identification, 100% (59/59) exhibited a “match”with the culture or sequencing results. These findings were obtained within three hours of whole blood collection. The Tm mapping method is useful for identifying infectious diseases requiring prompt treatment.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (45 results)

All 2015 2014 2013 2012

All Journal Article (13 results) (of which Peer Reviewed: 4 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (30 results) (of which Invited: 4 results) Book (1 results) Patent(Industrial Property Rights) (1 results) (of which Overseas: 1 results)

  • [Journal Article] Eukaryote-Made Thermostable DNA Polymerase Enables Rapid PCR-Based Detection of Mycoplasma, Ureaplasma and Other Bacteria in the Amniotic Fluid of Preterm Labor Cases2015

    • Author(s)
      Tomohiro Ueno, Hideki Niimi, Noriko Yoneda, Satoshi Yoneda, Masashi Mori, Homare Tabata, Hiroshi Minami, Shigeru Saito, and Isao Kitajima
    • Journal Title

      PLOS ONE

      Volume: 未定

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 血液検体からの起炎菌の直接検出・同定方法の開発2015

    • Author(s)
      仁井見 英樹
    • Journal Title

      化学療法の領域 増刊号

      Volume: 31(S-1) Pages: 211-219

    • Related Report
      2014 Annual Research Report
  • [Journal Article] トピックス 遺伝子検査ビジネスー検査技術の現状と問題点ー2015

    • Author(s)
      仁井見 英樹
    • Journal Title

      臨床化学

      Volume: Vol.44(No.1) Pages: 76-76

    • Related Report
      2014 Annual Research Report
  • [Journal Article] A Rapid and High-Throughput Quantitation Assay of the Nuclear Factor κB Activity Using Fluorescence Correlation Spectroscopy in the Setting of Clinical Laboratories2013

    • Author(s)
      Harada K, Mikuni S, Beppu H, Niimi H, Abe S, Hano N, Yamagata K, Kinjo M, Kitajima I
    • Journal Title

      PLOS ONE

      Volume: 8(10) e75579 Pages: 1-8

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Tm mapping法:検体採取後3時間以内での起炎菌同定を可能とする新たな検査法2013

    • Author(s)
      仁井見 英樹
    • Journal Title

      臨床化学

      Volume: Vol. 42(No. 2) Pages: 124-130

    • Related Report
      2013 Research-status Report
  • [Journal Article] Tm mapping法:敗血症起炎菌迅速同定システムの開発2013

    • Author(s)
      仁井見 英樹
    • Journal Title

      敗血症の診断/治療の実情と病態・メカニズムをふまえた開発戦略 (株)技術情報協会

      Volume: Vol. 1 Pages: 197-203

    • Related Report
      2013 Research-status Report
  • [Journal Article] 感染症迅速検査技術のUp To Date -核酸検査法の逆襲-2013

    • Author(s)
      仁井見 英樹
    • Journal Title

      臨床化学

      Volume: Vol. 42(No. 2) Pages: 104-104

    • Related Report
      2013 Research-status Report
  • [Journal Article] 原因菌3時間で特定-先端技術2013

    • Author(s)
      仁井見 英樹
    • Journal Title

      日経産業新聞

      Volume: 日刊 第10658号 Pages: 11-11

    • Related Report
      2013 Research-status Report
  • [Journal Article] Rapid identification system of food contamination by using a novel melting temperature (Tm) mapping method2013

    • Author(s)
      Hideki Niimi
    • Journal Title

      URAKAMI FOUNDATION MEMOIRS

      Volume: Vol. 21 Pages: 158-167

    • Related Report
      2013 Research-status Report
  • [Journal Article] メタゲノム解析が拓くマイクロバイオーム検査の可能性2013

    • Author(s)
      仁井見英樹
    • Journal Title

      臨床化学

      Volume: 42(1) Pages: 83-84

    • Related Report
      2012 Research-status Report
  • [Journal Article] Trend survey of ocular infections with bacteria at Toyama University Hospital over the past six years--from the standpoint of laboratory examination.2012

    • Author(s)
      Kubota T, Hayashi S, Niimi H, Kitajima I
    • Journal Title

      Rinsho Byori

      Volume: 60 Pages: 605-611

    • NAID

      10030990590

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Study of hemostatic biomarkers in acute ischemic stroke by clinical subtype.2012

    • Author(s)
      Hirano K, Takashima S, Dougu N, Taguchi Y, Nukui T, Konishi H, Toyoda S, Kitajima I, Tanaka K.
    • Journal Title

      J Stroke Cerebrovasc Dis.

      Volume: 21 Issue: 5 Pages: 404-410

    • DOI

      10.1016/j.jstrokecerebrovasdis.2011.08.013

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 一般細菌における核酸検査2012

    • Author(s)
      仁井見英樹
    • Journal Title

      MEDICAL TECHNOLOGY 臨時増刊号 「遺伝子検査実践マニュアル」

      Volume: 40 (13) Pages: 1587-1591

    • Related Report
      2012 Research-status Report
  • [Presentation] 血液中の菌数を敗血症重症度や治療効果の新たな指標とする検査技術の開発2014

    • Author(s)
      仁井見 英樹
    • Organizer
      第61回日本臨床検査医学会学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2014-11-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Tm mapping法(感染症起炎菌迅速同定法)の院内試験運用結果とその評価2014

    • Author(s)
      仁井見 英樹
    • Organizer
      第61回日本臨床検査医学会学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2014-11-24 – 2014-11-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 迅速簡便な感染症起炎菌同定技術の開発2014

    • Author(s)
      仁井見 英樹
    • Organizer
      日立中央研究所講演
    • Place of Presentation
      東京
    • Year and Date
      2014-11-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] 感染症起炎菌迅速同定法(Tm mapping法)の学内試験運用における正確性の評価2014

    • Author(s)
      仁井見 英樹
    • Organizer
      第54回日本臨床化学会年次学術集会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] Tm mapping法:患者検体採取後3時間以内での感染症起炎菌迅速同定法2014

    • Author(s)
      仁井見 英樹
    • Organizer
      第79回日本インターフェロン・サイトカイン学会学術集会
    • Place of Presentation
      札幌
    • Year and Date
      2014-06-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Melting Temperature (Tm) Mapping Method: A Novel Rapid, Easy, and Cost-Effective Method That Identifies Unknown Pathogenic Microorganisms within 3 Hours of Patient Sample Collection2014

    • Author(s)
      Hideki Niimi
    • Organizer
      Microbiology & Infectious Diseases Asia Congress
    • Place of Presentation
      Singapore
    • Year and Date
      2014-06-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Melting Temperature (Tm) Mapping Method: A Novel Method That Enables Rapid Identification of Unknown Pathogenic Bacteria In Sepsis Within Three Hours of Whole Blood Collection2014

    • Author(s)
      Hideki Niimi
    • Organizer
      ECCMID 2014
    • Place of Presentation
      Barcelona, Spain
    • Year and Date
      2014-05-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Melting Temperature (Tm) Mapping Method: A Novel Method That Enables Rapid Identification of Unknown Pathogenic Microorganisms within Three Hours of Patient Sample Collection2014

    • Author(s)
      Hideki Niimi
    • Organizer
      The 9th Cherry Blossom Symposium
    • Place of Presentation
      横浜
    • Year and Date
      2014-04-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Tm mapping法:患者検体採取後3時間以内での起炎菌迅速同定法2014

    • Author(s)
      仁井見 英樹
    • Organizer
      第25回日本臨床微生物学会総会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Research-status Report
  • [Presentation] 新規遺伝子変異スクリーニング法の発明と遺伝子診断への応用2014

    • Author(s)
      仁井見 英樹
    • Organizer
      第68回富山県医学会
    • Place of Presentation
      富山
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] A novel, rapid, easy and cost-effective method that identifies unknown pathogenic microorganisms within three hours of sample collection2013

    • Author(s)
      Hideki Niimi
    • Organizer
      ECCMID 2013
    • Place of Presentation
      Berlin, Germany
    • Related Report
      2013 Research-status Report
  • [Presentation] A new rapid, easy and cost-effective method that identifies unknown pathogenic microorganisms within 3 hours from sample collection2013

    • Author(s)
      Hideki Niimi
    • Organizer
      IFCC EUROMEDLAB 2013
    • Place of Presentation
      Milano, Italy
    • Related Report
      2013 Research-status Report
  • [Presentation] eukaryote-made Taq polymeraseを用いた迅速・簡便な子宮内感染症検査法の構築2013

    • Author(s)
      仁井見 英樹
    • Organizer
      第87回日本感染症学会学術講演会
    • Place of Presentation
      横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] 検体採取後3時間以内で不特定の起炎菌を同定するTm mapping法の開発2013

    • Author(s)
      仁井見 英樹
    • Organizer
      第87回日本感染症学会学術集会
    • Place of Presentation
      横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] Tm mapping法: 検体採取後3時間以内での迅速起炎菌同定法2013

    • Author(s)
      仁井見 英樹
    • Organizer
      第20回日本遺伝子診療学会大会
    • Place of Presentation
      浜松
    • Related Report
      2013 Research-status Report
  • [Presentation] A new rapid, easy, and cost-effective method that identifies unknown pathogenic microorganisms within 3 hours of sample collection2013

    • Author(s)
      Hideki Niimi
    • Organizer
      2013 AACC Annual Meeting
    • Place of Presentation
      Houston, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] 一般細菌における遺伝子検査2013

    • Author(s)
      仁井見 英樹
    • Organizer
      長崎大学検査部 検査部セミナー
    • Place of Presentation
      長崎
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Tm mapping法:検体採取後3時間以内で不特定の起炎菌を同定する迅速検査法2013

    • Author(s)
      仁井見 英樹
    • Organizer
      第53回日本臨床化学会年次学術集会
    • Place of Presentation
      徳島
    • Related Report
      2013 Research-status Report
  • [Presentation] eukaryote-made Taq DNA polymeraseおよびTm mapping法による感染症迅速検査システムの構築2013

    • Author(s)
      仁井見 英樹
    • Organizer
      第22回 信大臨床検査セミナー
    • Place of Presentation
      松本、長野
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] The Tm Mapping Method: A Novel Method That Enables Rapid Identification of Unknown Pathogenic Microorganisms within Three Hours of Patient Sample Collection2013

    • Author(s)
      Hideki Niimi
    • Organizer
      ID WEEK 2013
    • Place of Presentation
      San Francisco, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] Tm mapping法:患者検体採取後3時間以内での迅速起炎菌同定法2013

    • Author(s)
      仁井見 英樹
    • Organizer
      第60回日本臨床検査医学会学術集会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
  • [Presentation] 一般細菌における遺伝子検査2013

    • Author(s)
      仁井見英樹
    • Organizer
      微生物・遺伝子研究班研修会
    • Place of Presentation
      山梨大学
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] A novel rapid method enables identification of pathogenic micro-organisms within 3 hours after samples are collected2012

    • Author(s)
      Niimi H
    • Organizer
      the 22nd European Congress of Clinical Microbiology and Infectious Diseases
    • Place of Presentation
      London, UK
    • Related Report
      2012 Research-status Report
  • [Presentation] Tm値の組合せを用いた迅速・簡便な敗血症起炎菌同定ITシステムの開発2012

    • Author(s)
      仁井見英樹
    • Organizer
      第86回日本感染症学会総会・学術講演会
    • Place of Presentation
      長崎
    • Related Report
      2012 Research-status Report
  • [Presentation] "eukaryote-made" Taq DNA polymeraseの開発による高感度・正確なバクテリア検出法2012

    • Author(s)
      仁井見英樹
    • Organizer
      第86回日本感染症学会総会・学術講演会
    • Place of Presentation
      長崎
    • Related Report
      2012 Research-status Report
  • [Presentation] A novel rapid method that enables identification of pathogenic microorganisms within 3 hours after clinical samples are collected2012

    • Author(s)
      Niimi H
    • Organizer
      112th ASM 2012 General Meeting
    • Place of Presentation
      San Francisco, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] 化粧品素材の品質管理における、迅速・高感度・正確な微生物コンタミネーションのスクリーニング方法2012

    • Author(s)
      仁井見英樹
    • Organizer
      第3回 国際 化粧品開発展 アカデミックフォーラム
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] Tm mapping 法を用いた迅速・簡便な敗血症起炎菌同定ITシステムの開発2012

    • Author(s)
      仁井見英樹
    • Organizer
      第19回日本遺伝子診療学会大会
    • Place of Presentation
      千葉
    • Related Report
      2012 Research-status Report
  • [Presentation] A Novel Tm-mapping Method That Enables Identification Of Pathogenic Microorganisms Within 3 Hours After Samples Are Collected2012

    • Author(s)
      Niimi H
    • Organizer
      52nd ICAAC 2012
    • Place of Presentation
      San Francisco, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] Tm mapping法を用いた感染症起炎菌迅速同定システムの開発2012

    • Author(s)
      仁井見英樹
    • Organizer
      第59回日本臨床検査医学会学術集会
    • Place of Presentation
      京都
    • Related Report
      2012 Research-status Report
  • [Book] ?が!になる遺伝子検査 Vol.2 遺伝子2014

    • Author(s)
      仁井見 英樹 (担当:監修)
    • Total Pages
      14
    • Publisher
      Sysmex
    • Related Report
      2014 Annual Research Report
  • [Patent(Industrial Property Rights)] Method for identifying pathogenic microorganisms responsible for infection by extracting the DNA of a microorganism2013

    • Inventor(s)
      Hideki Niimi
    • Industrial Property Rights Holder
      Hideki Niimi
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013-01-30
    • Acquisition Date
      2013-05-06
    • Related Report
      2013 Research-status Report
    • Overseas

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi