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Characterization of novel ACME-SCCmec composite Islands in Japanese MRSA isolates: determination of genome structure and application to epidemiological studies.

Research Project

Project/Area Number 24590751
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Hygiene
Research InstitutionSapporo Medical University

Principal Investigator

Urushibara Noriko  札幌医科大学, 医学部, 講師 (80396308)

Co-Investigator(Kenkyū-buntansha) KOBAYASHI Nobumichi  札幌医科大学, 医学部, 教授 (80186759)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsブドウ球菌 / MRSA / ACME / アルギニン代謝 / SCCmec / 表皮ブドウ球菌 / 分子疫学
Outline of Final Research Achievements

The Arginine catabolic mobile element (ACME), a genomic island identified in the Staphylococci genome, is characteristically found in strain USA300, which is the predominant MRSA clone in the USA and is spreading globally. In the present study, the prevalence of ACME and the genetic diversity of ACME (+) MRSA were investigated for clinical isolates collected in Hokkaido.
The percentage of ACME carriage against the all MRSA isolates significantly increased in the course of study. Increased number of MRSA with the identical genotype as USA300 was observed, which suggests its potential spread in northern Japan. We focused on the ACME (+) MRSA with type II SCCmec (MRSA-II) because MRSA-II is the predominant genotype in Japanese MRSA. The genetic structures of ACME and its flanking region in MRSA-II were determined and novel genetic variants were identified. The similar analysis was carried out on coagulase-negative staphylococci clinical isolates obtained in Hokkaido.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (20 results)

All 2016 2015 2014 2013 2012

All Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 9 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (11 results)

  • [Journal Article] Arginine catabolic mobile elements in methicillin-resistant Staphylococcus aureus (MRSA) genotype ST5-MRSA-II and ST764-MRSA-II in Japan: novel structures and temporal changes.2016

    • Author(s)
      Urushibara N, Kawaguchia M, Onishi M, Mise K, Aung MS, Kobayashi N.
    • Journal Title

      Antimicrobial Agents and Chemotherapy

      Volume: 60 Issue: 5 Pages: 3119-3122

    • DOI

      10.1128/aac.02356-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Drug resistance and genetic characteristics of clinical isolates of staphylococci in Myanmar : high prevalence of PVL among methicillin-susceptible Staphylococcus aureus belonging to various sequence types.2016

    • Author(s)
      Aung MS, Zi H, New KM, Maw WW, Aung MT, Min WW, Nyein N, Kawaguchiya M, Urushibara N, Sumi A, Kobayashi N
    • Journal Title

      New Microbes and New Infections

      Volume: 10 Pages: 58-65

    • DOI

      10.1016/j.nmni.2015.12.007

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Drug resistance and molecular epidemiology of aerobic bacteria isolated from puerperal infections in Bangladesh.2015

    • Author(s)
      Ahmed S, Kawaguchiya M, Ghosh S, Paul SK, Urushibara N, Mahmud MC, Nahar K, Hossain MA, Kobayashi N
    • Journal Title

      Microb Drug Resist

      Volume: -

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Detection and Genetic Characterization of PVL-Positive ST8-MRSA-IVa and Exfoliative Toxin D-Positive European CA-MRSA-Like ST1931 (CC80) MRSA-IVa Strains in Bangladesh2014

    • Author(s)
      Paul S.K., Ghosh S., Kawaguchiya M., Urushibara N., Hossain M.A., Ahmed S., Mahmud C., Jilani M.S., Haq J.A., Ahmed A.A., Kobayashi N.
    • Journal Title

      Microbial Drug Resistance

      Volume: - Issue: 4 Pages: 325-336

    • DOI

      10.1089/mdr.2013.0153

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of emerging PVL/ACME-positive ST8-MRSA- IVa and ACME-positive CC5 (ST5/ST764)-MRSA strains in northern Japan2013

    • Author(s)
      Kawaguchiya M, Urushibara N, Ghosh S, Kuwahara O, Morimoto S, Ito M, Kudo K, Kobayashi N
    • Journal Title

      J Med Microbiol

      Volume: 62 Issue: 12 Pages: 1852-1863

    • DOI

      10.1099/jmm.0.062125-0

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Prevalence and genetic diversity of arginine catabolic mobile element (ACME) in clinical isolates of coagulase-negative staphylococci: Identification of ACME type I variants in Staphylococcus epidermidis.2013

    • Author(s)
      Onishi M., Urushibara N., Kawaguchiya M., Ghosh S., Shinagawa M., Watanabe N., Kobayashi N.
    • Journal Title

      Infection, Genetics and Evolution

      Volume: 20 Pages: 381-388

    • DOI

      10.1016/j.meegid.2013.09.018

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of PVL/ACME-positive methicillin- resistant Staphylococcus aureus (genotypes ST8-MRSA-IV and ST5-MRSA-II) isolated from a university hospital in Japan2013

    • Author(s)
      Kawaguchiya M, Urushibara N, Yamamoto D, Yamashita T, Shinagawa M, Watanabe N, Kobayashi N
    • Journal Title

      Microb Drug Resist

      Volume: 19 Issue: 1 Pages: 48-56

    • DOI

      10.1089/mdr.2012.0089

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Population deviation of piggery-associated methicillin-resistant Staphylococcus aureus based on mec-associated direct repeat unit analysis.2013

    • Author(s)
      Wan MT, Lauderdale TL, Kobayashi N, Urushibara N, Chou CC
    • Journal Title

      Infection, Genetics and Evolution

      Volume: 16C Pages: 349-354

    • DOI

      10.1016/j.meegid.2013.03.030

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Two novel arginine catabolic mobile elements and staphylococcal chromosome cassette mec composite islands in community-acquired methicillin-resistant Staphylococcus aureus genotypes ST5-MRSA-V and ST5-MRSA-II.2012

    • Author(s)
      Urushibara N, Kawaguchiya M, Kobayashi N
    • Journal Title

      Jouranl of antimicrobial chemotherapy

      Volume: 67 Issue: 8 Pages: 1828-1834

    • DOI

      10.1093/jac/dks157

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] ミャンマーにおける病院獲得型ブドウ球菌の薬剤耐性と遺伝学的特徴2016

    • Author(s)
      Meijisoe Aung,川口谷 充代,漆原 範子,小林 宣道
    • Organizer
      第 89 回日本細菌学会総会
    • Place of Presentation
      大阪国際交流センター(大阪市)
    • Year and Date
      2016-03-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic characterization of MRSA isolates harbouring PVL genes and/or ACME in Hokkaido.2015

    • Author(s)
      Aung M., Kawaguchiya M., Urushibara N., Kobayashi N.
    • Organizer
      第 88 回日本細菌学会
    • Place of Presentation
      長良川国際会議場 (岐阜市)
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Molecular epidemiology of E. coli and S. aureus isolated from puerperal infections in Bangladesh.2015

    • Author(s)
      Kobayashi N., Ahmed S., Kawaguchiya M., Urushibara N., Aung M.
    • Organizer
      第 88 回日本細菌学会
    • Place of Presentation
      長良川国際会議場 (岐阜市)
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Novel SCCmec Composite Elements Containing Two mecA Genes Identified in Staphylococcus haemolyticus.2015

    • Author(s)
      Urushibara N., Onishi M., Kawaguchiya M., Paul S.K., Kobayashi, N.
    • Organizer
      第 88 回日本細菌学会
    • Place of Presentation
      長良川国際会議場 (岐阜市)
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Characteristics and genetic diversity of PVL/ACME-positive MRSA strains isolated in Hokkaido, the northern main island of Japan2013

    • Author(s)
      Kobayashi N., Kawaguchiya M., Urushibara N., Ghosh S., Ito M., Kuwahara S., Quiñones D.
    • Organizer
      28th International Congress of Chemotherapy and Infection
    • Place of Presentation
      Yokohama, Japan
    • Related Report
      2013 Research-status Report
  • [Presentation] Prevalence and genetic characterization of SCCmec and ACME in coagulase-negative staphylococci.2013

    • Author(s)
      Onishi M. Urushibara N, Shinagawa M, Watanabe N, Kobayashi N.
    • Organizer
      28th International Congress of Chemotherapy and Infection
    • Place of Presentation
      Yokohama, Japan
    • Related Report
      2013 Research-status Report
  • [Presentation] Genetic diversities in ACME-SCCmec composite islands in MRSA carrying SCCmec type II collected in Hokkaido, Japan.2013

    • Author(s)
      Urushibara N., Kawaguchiya M., Kobayashi, N.
    • Organizer
      28th International Congress of Chemotherapy and Infection
    • Place of Presentation
      Yokohama, Japan
    • Related Report
      2013 Research-status Report
  • [Presentation] Two Novel Staphylococcal Cassette Chromosome mec Elements Containing Two Copies of mecA genes Identified in Bangladeshi Clinical Isolates of Staphylococcus haemolyticus.2013

    • Author(s)
      Urushibara N., Kawaguchiya M., Paul S.K., Kobayashi, N.
    • Organizer
      1st International Interscience Conference on Infection and Chemotherapy
    • Place of Presentation
      Seoul, Korea
    • Related Report
      2013 Research-status Report
  • [Presentation] Structural Variations of ACME-SCCmec composite islands in MRSA carrying SCCmec type II collected in Hokkaido, Japan.2013

    • Author(s)
      Urushibara N, Kawaguchiya M, Kobayashi N
    • Organizer
      28th International Congress of Chemotherapy and Infection (ICC 2013)
    • Place of Presentation
      Yokohama (Japan)
    • Related Report
      2012 Research-status Report
  • [Presentation] Characteristics and genetic diversity of PVL/ACME-positive MRSA strains isolated in Hokkaido, the northern main island of Japan.2013

    • Author(s)
      Kobayashi N, Kawaguchiya M, Urushibara N, Ghosh S, Ito M, Kuwahara S, Quinones D
    • Organizer
      28th International Congress of Chemotherapy and Infection (ICC 2013)
    • Place of Presentation
      Yokohama (Japan)
    • Related Report
      2012 Research-status Report
  • [Presentation] Genetic diversities in ACME-SCCmec composite islands in MRSA isolates collected in Hokkaido, the northern main island of Japan.2012

    • Author(s)
      Urushibara N, Kawaguchiya M, Kobayashi N
    • Organizer
      15th International Symposium on Staphylococci and Staphylococcal Infections
    • Place of Presentation
      Lyon (France)
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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