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Mechanism of novel peptide metabolism system in periodontophatic bacterium

Research Project

Project/Area Number 24592809
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional basic dentistry
Research InstitutionNagasaki University

Principal Investigator

NEMOTO Takayuki  長崎大学, 医歯薬学総合研究科(歯学系), 教授 (90164665)

Co-Investigator(Kenkyū-buntansha) NEMOTO Yuko  長崎大学, 医歯薬学総合研究科(歯学系), 准教授 (10164667)
BABA Tomomi  長崎大学, 医歯薬学総合研究科(歯学系), 助教 (60189717)
KOBAYAKAWA Takeshi  長崎大学, 医歯薬学総合研究科(歯学系), 技術職員 (10153587)
ITO Kiyoshi  摂南大学, 薬学部, 教授 (50201926)
馬場 友巳  長崎大学, 医歯薬学総合研究科(歯学系), 助教 (60189727)
Co-Investigator(Renkei-kenkyūsha) KIMURA Shigenobu  岩手医大, 歯学部, 教授 (10177917)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsPorphyromonas gingivalis / 歯周病 / エキソペプチダーゼ / ジペプチジルペプチダーゼ / アシルオリゴペプチジルペプチダーゼ / アミノ酸代謝 / タンパク質分解 / 歯周病原性細菌 / オリゴペプチダーゼ / DPP11 / DPP5 / アシルアミノペプチダーゼ / ペプチダーゼ / 基質特異性 / ジペプチジルププチダーゼ / 口腔細菌
Outline of Final Research Achievements

An asaccharolytic bacterium Porphyromonas gingivalis utilizes extracellular proteins as carbon sources. Since proteins are incorporated into bacterial cell mainly as di- and tri-peptides, exopeptidases including two dipeptidyl peptidases (DPPs) and one propyl tripeptidyl peptidase A (PtpA) are viewed as prerequisite for the metabolism. In 2011, we discovered novel DPP, designated DPP11, which indicated that this process is further mediated by yet-unkown exopeptidases. In this study, we identified that DPP5 and acylpeptidyl oligopeptidase (AOP) are expressed in P. gingivalis. DPP5 possessed hydrophobic P1 specificity similar to DPP7, but the two DPPs shared the substrates through the difference in the P2-position specificity. AOP is a novel and unique peptidase, because it is able to release N-terminally blocked oligopeptides unable to be managed by DPPs and PtpA. A line up of various exopeptidases shoulb be beneficial for the survival the nutritionally-limited subgingival environment.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (27 results)

All 2015 2014 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (16 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Identification of dipeptidyl-peptidase (DPP)5 and DPP7 in Porphyromonas endodontalis, distinct from those in Porphyromonas gingivalis.2014

    • Author(s)
      Nishimata H, Ohara-Nemoto Y, Baba TT, Hoshino T, Fujiwara T, Shimoyama Y, Kimura S, Nemoto TK.
    • Journal Title

      PLoS One

      Volume: 9 Issue: 12 Pages: 1-15

    • DOI

      10.1371/journal.pone.0114221

    • NAID

      120006986295

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification and characterization of prokaryotic dipeptidyl-peptidase 5 from Porphyromonas gingivalis.2014

    • Author(s)
      Ohara-Nemoto Y, Rouf SMA, Naito M, Yanase A, Tetsuo F, Ono T, Kobayakawa T, Shimoyama Y, Kimura S, Nakayama K, Saiki K, Konishi K, Nemoto TK.
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Issue: 9 Pages: 5438-5448

    • DOI

      10.1074/jbc.m113.527333

    • NAID

      120006986777

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Co-overexpression of cortactin and CRKII increases migration and invasive potential in oral squamous cell carcinoma2014

    • Author(s)
      Yamada S, Yanamoto S, Rokutannda S, Miyakoshi M, Naruse T, Kawakita A, Kawasaki G, Nemoto TK, Umeda M
    • Journal Title

      J Oral Maxillofac Surg Med Pathol

      Volume: 26 Issue: 1 Pages: 14-21

    • DOI

      10.1016/j.ajoms.2012.11.004

    • Related Report
      2014 Annual Research Report 2012 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A bone substitute with high affinity for vitamin D binding protein-relationship to niche of osteoclasts2014

    • Author(s)
      Ikeda, T., Kasai, M., Tatsukawa, E., Kamitakahara, M., Shibata, Y., Yokoi, T., Nemoto, T. K., Ioku, K.
    • Journal Title

      J. Cell Mol. Med

      Volume: 18 Issue: 1 Pages: 170-180

    • DOI

      10.1111/jcmm.12180

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 新規ジペプチジルペプチダーゼと歯周病原性細菌のタンパク質分解・ 取り込み機構の解明2014

    • Author(s)
      根本孝幸
    • Journal Title

      発酵研究所助成研究報告集 IFO Research Communications

      Volume: 28 Pages: 21-21

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Discrimination based on Gly and Arg/Ser at Position 673 between Dipeptidyl-peptidase (DPP) 7 and DPP11, Widely Distributed DPPs in Pathogenic and Environmental Gram-Negative Bacteria2013

    • Author(s)
      Rouf, S.M.A., Ohara-Nemoto, Y., Hoshino, T., Fujiwara, T., Ono, T., Nemoto, T.K.
    • Journal Title

      Biochimie

      Volume: 95 Issue: 4 Pages: 824-831

    • DOI

      10.1016/j.biochi.2012.11.019

    • NAID

      120006985514

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Involvement of geranylgeranylation of Rho and Rac GTPases in adipogenic and RANKL expression, which was inhibited by simvastatin2013

    • Author(s)
      Baba TT, Ohara-Nemoto Y, Miyazaki T, and Nemoto TK
    • Journal Title

      Cell Biochem Funct.

      Volume: 28 Issue: 8 Pages: 652-659

    • DOI

      10.1002/cbf.2951

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Phenylalanine 664 of dipeptidyl peptidase (DPP) 7 and Phenylalanine 671 of DPP11 mediate preference for P2-position hydrophobic residues of a substrate.2013

    • Author(s)
      Rouf, S. M., Ohara-Nemoto, Y., Ono, T., Shimoyama, Y., Kimura, S. and Nemoto, T. K.
    • Journal Title

      FEBS Open Bio.

      Volume: 3 Issue: 1 Pages: 177-183

    • DOI

      10.1016/j.fob.2013.03.004

    • NAID

      120006985739

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Propeptide processing and the proteolytic activity of proenzymes of the staphylococcal and enterococcal GluV8-family protease2012

    • Author(s)
      Rouf SMA, Ohara-Nemoto Y, Shimoyama Y, Kimura S, Ono T and Nemoto TK
    • Journal Title

      Indian J. Biochem. Biophys.

      Volume: 48 Pages: 421-427

    • NAID

      120006985515

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Laminins 411 and 421 differentially promote tumor cell migration via alpha6beta1 integrin and MCAM.2015

    • Author(s)
      石河太知,下山佑,根本優子,佐々木実,木村重信
    • Organizer
      第88回日本細菌学会総会
    • Place of Presentation
      岐阜市
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 歯周病原性細菌の新規オリゴペプチダーゼの基質特異性と分子集合解離機構2014

    • Author(s)
      根本孝幸,小野俊雄,下山佑,木村重信,根本優子
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館・グランドプリンスホテル京都(京都市)
    • Year and Date
      2014-10-15 – 2014-10-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] 歯周病原性細菌の新規オリゴペプチダーゼ:基質特異性と分子集合性2014

    • Author(s)
      根本孝幸,根本優子,小野俊雄,下山佑,木村重信
    • Organizer
      第56回歯科基礎医学会学術大会・総会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] SLPIによるPorphyromonas gingivalisに対する感染抑制作用2014

    • Author(s)
      下山佑,石河太知,根本優子,根本孝幸,佐々木実,木村重信
    • Organizer
      第56回歯科基礎医学会学術大会・総会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 新規ジペプチジルペプチダーゼと歯周病原性細菌のタンパク質分解・取り込み機構の解明2014

    • Author(s)
      根本孝幸
    • Organizer
      発酵研究所第8回助成研究報告会
    • Place of Presentation
      大阪府豊中市(千里ライフサイエンスセンター)
    • Related Report
      2013 Research-status Report
  • [Presentation] Identification and Characterization of Dipeptidyl-Peptidase V as a Member for Dipeptide Production in Porphyromonas gingivalis.2013

    • Author(s)
      根本孝幸,ラオフ シャーク ムハマド アブドゥー,根本優子,下山佑,木村重信
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      神奈川県横浜市(パシフィコ横浜)
    • Related Report
      2013 Research-status Report
  • [Presentation] Porphyromonas endodontalisの発現するユニークなジペプチジルペプチダーゼ(DPP)VおよびDPP72013

    • Author(s)
      柳瀬絵美,根本優子,下山佑,木村重信,馬場友巳,根本孝幸
    • Organizer
      第55回歯科基礎医学会学術大会
    • Place of Presentation
      岡山県岡山市(岡山コンベンションセンター))
    • Related Report
      2013 Research-status Report
  • [Presentation] Towards the structural basis of peptide binding to dipeptidyl peptidase 11 of Porphyromonas gingivalis.2013

    • Author(s)
      Bezerra GA, Ohara-Nemoto Y, Nemoto TK, Djinovic-Carugo K
    • Organizer
      RAMC (Recent Advances in Macromolecular Crystallization)
    • Place of Presentation
      Bischoffsheim, France
    • Related Report
      2013 Research-status Report
  • [Presentation] Dipeptide production in Porphyromonas gingivalis mediated by dipeptidyl peptidases and gingipains.2013

    • Author(s)
      Ohara-Nemoto Y, Abdur-Rouf S M, Shimoyama Y, Kimura S, Nemoto TK
    • Organizer
      113rd General Meeting of ASM
    • Place of Presentation
      Denver, Colorado, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] Distribution of Porphyromonas gingivalis fimA genotypes in the children’s plaques.2013

    • Author(s)
      Shioyama Y. Ohara-Nemoto Y, Kimura M, Sasaki M, Tanaka M, Kimura S
    • Organizer
      113rd General Meeting of ASM
    • Place of Presentation
      Denver, Colorado, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] Nested PCRを用いた小児口腔へのPorphyromonas gingivalis 線毛タイプ別感染実態の検討 (Distribution of Porphyromonas gingivalis fimA genotypes in children using by nested PCR)2013

    • Author(s)
      下山佑,木村美澄,佐々木実,根本優子,古玉芳豊,上戸幸美,田中光郎,木村重信
    • Organizer
      第86回日本細菌学会総会
    • Place of Presentation
      千葉県千葉市(幕張メッセ国際会議場)
    • Related Report
      2013 Research-status Report
  • [Presentation] Expression and characterization of dipeptidyl-peptidases of Porphyromonas gingivalis.2012

    • Author(s)
      Rouf SMA, Ohara-Nemoto Y, Yanase A, Ono T, Nemoto TK
    • Organizer
      1st International Conference on Porphyromonas gingivalis and Related Bacterial Species
    • Place of Presentation
      長崎
    • Related Report
      2012 Research-status Report
  • [Presentation] Dipeptide production and assimilation in Porphyromonas gingivalis by four dipeptidyl peptidases.2012

    • Author(s)
      Rouf SMA, Ohara-Nemoto Y, Nemoto TK:
    • Organizer
      The 6th Nagasaki Symposium on Tropical and Emerging Infectious Diseases and The 11th Nagasaki-Singapore Medical Symposium
    • Place of Presentation
      長崎
    • Related Report
      2012 Research-status Report
  • [Presentation] S46ファミリーペプチダーゼ(DPP7/DPP11)の分類とDPP11サブタイプの同定.第54回歯科基礎医学学術大会2012

    • Author(s)
      根本孝幸,Rouf SMA,小野俊雄,下山 佑,木村重信,根本優子
    • Organizer
      第54回歯科基礎医学学術大会
    • Place of Presentation
      郡山
    • Related Report
      2012 Research-status Report
  • [Presentation] 歯周病原性細菌の生育における新規のペプチダーゼDPPの重要性2012

    • Author(s)
      哲翁ふみ,柳瀬絵見,アブドューラオフ,根本孝幸,根本優子
    • Organizer
      第22回日本歯科医学会総会
    • Place of Presentation
      大阪
    • Related Report
      2012 Research-status Report
  • [Presentation] 4種のPorphyromonas gingivalisジペプチジルペプチダーゼの基質特異性と産生ジペプチドレパートリー2012

    • Author(s)
      柳瀬絵見,Rouf SMA,小野俊雄,根本優子,根本孝幸
    • Organizer
      第54回歯科基礎医学学術大会
    • Place of Presentation
      郡山
    • Related Report
      2012 Research-status Report
  • [Book] InTech Endocarditis ISBN 978-953-307-901-1 Edited by: Francisco Ramón Breijo-Márquez2012

    • Author(s)
      Ohara-Nemoto Y, Kimura S, and Nemoto TK
    • Total Pages
      10
    • Publisher
      NVS and Staphylococci in the oral cavity – a case of infective endodontalis
    • Related Report
      2012 Research-status Report
  • [Remarks] 長崎大学 医歯薬学総合研究科 口腔分子生化学分野

    • URL

      http://www.de.nagasaki-u.ac.jp/education/dept_omb.html

    • Related Report
      2013 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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