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4D Gene Analysis in Functional Neuronal Circuits

Research Project

Project/Area Number 24650216
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Fusional basic brain science
Research InstitutionKyoto University

Principal Investigator

WANG Dan Ohtan  京都大学, 物質-細胞統合システム拠点, 助教 (50615482)

Co-Investigator(Renkei-kenkyūsha) OKAMOTO Akimitsu   (60314233)
SUGI Takuma   (70571305)
Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsイメージング / RNA / 空間分布 / 転写 / 小脳 / RNA ダイナミズム / in vivo / イメージング技術 / プローブテクノロジー / 記憶
Research Abstract

De novo transcription is required for long-term plasticity and lasting memory formation. We are developing live-cell RNA imaging techniques to visualize RNA dynamics in a living and functional neuronal circuit where memory information is stored. To do so, we have delivered light-on probes into the living mouse cerebella and imaged RNA molecules at single cell level. Curiously, we have observed spatial organization of RNA molecules that are concentrated at specific intranuclear foci. We are currently optimizing the system to apply the imaging method to memory studies.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (33 results)

All 2014 2013 2012 Other

All Journal Article (6 results) (of which Peer Reviewed: 4 results) Presentation (24 results) (of which Invited: 6 results) Remarks (3 results)

  • [Journal Article] A nucleic acid probe labeled with desmethyl thiazole orange : a new type of hybridization-sensitive fluorescent oligonucleotide for live-cell RNA imaging2013

    • Author(s)
      Okamoto A, Sugizaki K, Yuki M, Yanagisawa H, Ikeda S, Sueoka T, Hayashi G, Wang DO.
    • Journal Title

      Org Biomol Chem

      Volume: 11(2) Pages: 362-71

    • Related Report
      2013 Final Research Report
  • [Journal Article] A nucleic acid probe labeled with desmethyl thiazole orange : A new type of hybridization-sensitive fluorescent oligonucleotide for live-cell RNA imaging2013

    • Author(s)
      Okamoto, A. ; Sugizaki, K. ; Yuki, M. ; Yanagisawa, H. ; Ikeda, S. ; Sueoka, T. ; Hayashi, G. ; Wang, D. O
    • Journal Title

      Org. Biomol. Chem.

      Volume: 11-2 Issue: 2 Pages: 362-371

    • DOI

      10.1039/c2ob26707a

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ECHO probes : fluorescence emission control for nucleic acid imaging.2012

    • Author(s)
      Wang DO and Akimitsu Okamoto
    • Journal Title

      Journal of Photochemistry and Photobiology, C, Photochemistry Reviews

      Volume: 13(2) Pages: 112-123

    • Related Report
      2013 Final Research Report
  • [Journal Article] ECHO probes: Fluorescence emission control for nucleic acid imaging2012

    • Author(s)
      Wang, Dan Ohtan; Okamoto, Akimitsu
    • Journal Title

      J. Photochem. Photobiol. C-Photochem. Rev.

      Volume: 13 Issue: 2 Pages: 112-123

    • DOI

      10.1016/j.jphotochemrev.2012.03.001

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification of a cis-acting element that localizes mRNA to synapses2012

    • Author(s)
      Meer EJ, Wang DO, Kim S, Barr I, Guo F, Martin KC
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 109(12) Issue: 12 Pages: 4639-4644

    • DOI

      10.1073/pnas.1116269109

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A rapid and effective FISH protocol with hybridization-sensitive fluorescent linear oligo probes2012

    • Author(s)
      Wang, D.O., Matsuno, H., Ikeda, S., Nakamura, A., Yanagisawa, H., Hayashi, Y., Okamoto, A.
    • Journal Title

      RNA

      Volume: 18 Issue: 1 Pages: 166-175

    • DOI

      10.1261/rna.028431.111

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Mesoscopic Regulation of RNA dynamics in Neurons2014

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      RIKEN WiSE UP Symposium
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      Stem Cell Australia Joint Symposium
    • Related Report
      2013 Final Research Report
  • [Presentation] 核酸プローブを駆使した生体内RNA時空間制御の蛍光イメージング2013

    • Author(s)
      王丹・平野明日香・大本育美・梅島宏樹・見学美根子・下郡智美・岡本晃充
    • Organizer
      日本化学会第93回春季年会
    • Related Report
      2013 Final Research Report
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      RSC-iCeMS International Symposium
    • Related Report
      2013 Final Research Report
  • [Presentation] RNA Imaging in Living Tissues with Excition-controlled Fluorescent Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      10thInternational Conference on Intracellular RNA Localization and Localized Translation
    • Related Report
      2013 Final Research Report
  • [Presentation] Live-cell Imaging of Endogenous RNA with Exciton-controlled Hybridization-sensitive Fluorescent Probes2013

    • Author(s)
      Ikumi Oomoto, Asuka Hirano, Hiroki Umeshima, Mineko Kengaku, Akimitsu Okamoto, Tomomi Shimogori, Dan Ohtan Wang
    • Organizer
      15th annual meeting of RNA society
    • Related Report
      2013 Final Research Report
  • [Presentation] RNA Imaging in Living Tissues with Exciton-controlled Fluorescent Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      10th International Conference on Intracellular RNA Localization and Localized Translation
    • Place of Presentation
      Ontario, Canada
    • Related Report
      2013 Annual Research Report
  • [Presentation] RNA Imaging in Living Tissues with Excition-controlled Fluorescent Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      15th annual meeting of RNA society
    • Place of Presentation
      愛媛県 県民文化会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] Live-cell Imaging of Endogenous RNA with Exciton-controlled Hybridization-sensitive Fluorescent Probes2013

    • Author(s)
      大本育実
    • Organizer
      Riboclub
    • Place of Presentation
      Hotel Cheribourg
    • Related Report
      2013 Annual Research Report
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      SCA-iCeMS Joint Symposium
    • Place of Presentation
      Melbourne
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 核酸プローブを駆使した生体内RNA時空間制御の蛍光イメージング2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      日本化学会第93回春季年会
    • Place of Presentation
      立命館大学・びわこ草津キャンパス
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2013

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      "RSC-iCeMS International Symposium “Cell-Material Integration and Biomaterials Science"
    • Place of Presentation
      Kyoto University
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] RNA Regulation in Space and Time2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      CLS-iCeMS Joint Symposium in Beijing
    • Place of Presentation
      China
    • Related Report
      2013 Final Research Report
  • [Presentation] In vivo RNA Imaging with Hybridization-sensitive Fluorescent Oligonucleotide Probes2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      The 22nd CDB Meeting RNA Sciences in Cell and Developmental Biology II
    • Place of Presentation
      理化学研究所発生・再生科学総合研究センター(神戸市)
    • Related Report
      2013 Final Research Report
  • [Presentation] ECHOプローブによる細胞内RNAイメージング2012

    • Author(s)
      林剛介、池田修司、王丹、杉崎香織、末岡拓馬、岡本晃充
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Related Report
      2013 Final Research Report
  • [Presentation] シナプス可塑性に関与する空間的遺伝子制御/Spatial gene expression in neurons during long-term neuronal2012

    • Organizer
      第35回日本神経科学大会
    • Related Report
      2013 Final Research Report
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      6th Annual Symposium on Nanobiotechnology
    • Related Report
      2013 Final Research Report
  • [Presentation] Live-cell RNA imaging through advanced ECHO probes2012

    • Author(s)
      岡本晃充
    • Organizer
      第39回国際核酸化学シンポジウム
    • Related Report
      2013 Final Research Report
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      第35回日本分子生物学会年会
    • Related Report
      2013 Final Research Report
  • [Presentation] RNA Regulation in Space and Time2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      CLS-iCeMS Joint Symposium
    • Place of Presentation
      Beijing
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] In vivo RNA Imaging with Hybridization-sensitive Fluorescent Oligonucleotide Probes2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      The 22nd CDB Meeting"RNA Sciences in Cell and Developmental Biology II
    • Place of Presentation
      Kobe RIKEN CDB
    • Related Report
      2012 Research-status Report
  • [Presentation] Spatial Gene Expression in Neurons2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      The35th Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      Nagoya
    • Related Report
      2012 Research-status Report
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      6th Annual Symposium on Nanobiotechnology "Kyoto Cell-Material Integration 2012
    • Place of Presentation
      Kyoto University
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Imaging Spatiotemporal RNA Regulation with Photochemical Probes2012

    • Author(s)
      Dan Ohtan Wang
    • Organizer
      The35th Annual Meeting of the Molecular Biology Society of Japan
    • Place of Presentation
      Fukuoka
    • Related Report
      2012 Research-status Report
    • Invited
  • [Remarks]

    • URL

      http://www.ohtan.icems.kyoto-u.ac.jp/?page_id=10

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.icems.kyoto-u.ac.jp/e/ppl/grp/wang.html

    • Related Report
      2013 Final Research Report
  • [Remarks] http://www.ohtan.icems.kyoto-u.ac.jp/

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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