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development of preparation of modified tRNA using protein

Research Project

Project/Area Number 24655145
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionHokkaido University

Principal Investigator

TANAKA Yoshikazu  北海道大学, 先端生命科学研究科(研究院), 准教授 (20374225)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
KeywordstRNA / 精製 / 修飾 / 結晶化 / 結晶構造解析 / 結晶
Research Abstract

In this study, I tried to establish conventional method to prepare highly pure modified tRNA from E. coli cell using tRNA-protein complex spontaneously formed in the cells. First, I established preparation system for tRNA(Met) using E. coli tRNA(Met) acetyltransferase. For this purpose, I selected K205A mutant, which has high affinity for tRNA. Moreover, crystals of the purified tRNA(Met) were obtained. The crystals diffracted about 6-angstrom resolution at synchrotron radiation facility. Furthermore, co-expression system of selenium introducing enzyme with tRNA(Gln), tRNA(Glu), and tRNA(Lys) in E. coli were constructed, and pure tRNAs were prepared from the tRNA-protein complex spontaneously formed in the E. coli cell.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (15 results)

All 2014 2013 2012 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (2 results) Remarks (3 results)

  • [Journal Article] Direct interaction between EFL1 and SBDS is mediated by an intrinsically disordered insertion domain2014

    • Author(s)
      Nozomi Asano, Haruka Atsuumi, Akiyoshi Nakamura, Yoshikazu Tanaka, Isao Tanaka. Min Yao
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 443 Issue: 4 Pages: 1251-1256

    • DOI

      10.1016/j.bbrc.2013.12.143

    • NAID

      120005429607

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3 (2), Regulates Transcription of sco4007 by Multidrug Recognition2013

    • Author(s)
      Takeshi Hayashi, Yoshikazu Tanaka, Naoki Sakai, Ui Okada, Min Yao, Nobuhisa Watanabe, Tomohiro Tamura and Isao Tanaka
    • Journal Title

      Journal of Molecular Biology

      Volume: 435 Issue: 18 Pages: 3289-3300

    • DOI

      10.1016/j.jmb.2013.06.013

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3 (2) : Regulating the expression of gene sco5551 as a transcriptional activator with a novel diner shape2013

    • Author(s)
      Takeshi Hayashi, Yoshikazu Tanaka, Naoki Sakai, Nobuhisa Watanabe, Tomohiro Tamura, Isao Tanaka, Min Yao
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 435 Issue: 1 Pages: 28-33

    • DOI

      10.1016/j.bbrc.2013.04.017

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of dihydrouridine svnthase C (DusC) from Escherichia coli2013

    • Author(s)
      Minghao Chen, Jian Yu, Yoshikazu Tanaka, Miyuki Tanaka, Isao Tanaka and Min Yao
    • Journal Title

      Acta Crystallographica

      Volume: F69 Issue: 8 Pages: 834-838

    • DOI

      10.1107/s1744309113019489

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of Enzyme CapF of Staphylococcus aureus Reveals a Unique A rchitecture Composed of Two Functional Domains2012

    • Author(s)
      Miyafusa T, Caaveiro JM, Tanaka Y, Tsumoto K
    • Journal Title

      Biochemical journal

      Volume: (印刷中) Issue: 3 Pages: 671-680

    • DOI

      10.1042/bj20112049

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Application of Photoactive Yellow Protein as a Photoresponsive Module for Controlling Hemolytic Activity of Staphylococcal α-Hemolysin2012

    • Author(s)
      M. Ui, et al.
    • Journal Title

      Chemical Communications

      Volume: 48 Issue: 39 Pages: 4737-4739

    • DOI

      10.1039/c2cc18118e

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] P19 embryonal carcinoma cells exhibit high sensitivity to botulinum type C and D/C mosaic neurotoxins2012

    • Author(s)
      Kentaro Tsukamoto, Hideyuki Arimitsu, Sadayuki Ochi, Keiji Nakamura, Yoshikazu Tanaka, Nipawan Nuemket, Koki Taniguchi, Shunji Kozaki and Takao Tsuji
    • Journal Title

      Microbiol. Immunol

      Volume: 56(10) Issue: 10 Pages: 664-672

    • DOI

      10.1111/j.1348-0421.2012.00490.x

    • NAID

      40019437037

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] The binding mechanism of eIF2β with its partner proteins, eIF5 and eIF2Bε, Biochem2012

    • Author(s)
      Gai Z, Kitagawa Y, Tanaka Y, Shimizu N, Komoda K, Tanaka I, Yao M
    • Journal Title

      Biophys. Res. Commun

      Volume: 423 Issue: 3 Pages: 515-519

    • DOI

      10.1016/j.bbrc.2012.05.155

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus2012

    • Author(s)
      Shunsuke Kita, Yoshikazu Tanaka, Nagisa Hirano, Satoshi Kimura, Takeo Suzuki, Tsutomu Suzuki, Min Yao, and Isao Tanaka
    • Journal Title

      Protein & Pept. Lett.

      Volume: 20 Pages: 530-537

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus.2012

    • Author(s)
      Kita, S.
    • Journal Title

      Protein & Pept. Lett.

      Volume: 20 Pages: 530-537

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Crystal structure analysis of a DING protein, International life-science symposium for young scientists2014

    • Author(s)
      Zuoqi Gai, Akiyoshi Nakamura, Yoshikazu Tanaka, Nagisa Hirano, Isao Tanaka, and Min Yao
    • Organizer
      Faculty of Science
    • Place of Presentation
      Hokkaido University (Sapporo, Japan)
    • Year and Date
      2014-03-03
    • Related Report
      2013 Final Research Report
  • [Presentation] Crystal structure analysis of a DING protein2014

    • Author(s)
      Zuoqi Gai, Akiyoshi Nakamura, Yoshikazu Tanaka, Nagisa Hirano, Isao Tanaka, and Min Yao
    • Organizer
      International life-science symposium for young scientists
    • Place of Presentation
      北海道大学理学部(札幌市)
    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://altair.sci.hokudai.ac.jp/g6/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 北海道大学 X線構造生物学研究室 ホームページ

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

    • Related Report
      2013 Annual Research Report
  • [Remarks] X線構造生物学研究室

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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