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Does the folate-dependent RNA methyltransferase regulate DNA replication?

Research Project

Project/Area Number 24655156
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Chemistry related to living body
Research InstitutionEhime University

Principal Investigator

HORI Hiroyuki  愛媛大学, 理工学研究科, 教授 (20256960)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsRNA / RNA modification / methylation / DNA synthesis / folate / enzyme / thermophile / RNA modification / methylation / DNA synthesis / folate / enzyme / thermophiles / RNA修飾 / DNA合成 / tRNA / メチル化 / メチル化酵素 / チミジル酸合成酵素 / 葉酸 / 真正細菌 / 酵素 / 核酸 / RNA / ゲノム / 遺伝子
Outline of Final Research Achievements

The purpose of this sudy was the validation of our hypothesis, in which the folate-dependent RNA methyltransferase (TrmFO) regulates the DNA synthesis via consumption of 5, 10-methylenetetrahydrofolate. Under nutrient-poor condition, the trmFO gene disruptant strain of extreme-thermophilic eubacterium, Thermus thermophilus, grew faster than the wild-type strain. The slow growth of wild-type strain was accelarated by addition of thymine or thymidilate. These results supported the hypothesis. Furthermore, we determined the molecular ratio of TrmFO, 5, 10-methylenetetrahydrofolate synthase and thymidilate synthase. Our in vitro experiment revealed that TrmFO and thymidilate synthase compete each other via comsumption of 5, 10-methylenetetrahydrofolate.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (14 results)

All 2014 2012 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (10 results) (of which Invited: 2 results) Remarks (3 results)

  • [Journal Article] The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO)2012

    • Author(s)
      Yamagami R, Yamashita K, Nishimasu H, Tomikawa C, Ochi A, Iwashita C, Hirata A, Ishitani R, Nureki O, Hori H
    • Journal Title

      J Biol Chem

      Volume: 287 Issue: 51 Pages: 42480-42480

    • DOI

      10.1074/jbc.m112.390112

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 高度好熱菌Thermus thermophilusにおけるtRNA修飾ネットワーク上から見た葉酸依存性RNAメチル化酵素TrmFOの存在意義2014

    • Author(s)
      山上龍太、鴫 直樹、朝井真一、渡辺公綱、堀 弘幸
    • Organizer
      第15回極限環境生物学会
    • Place of Presentation
      今帰仁村コミュニティ センター、今帰仁村、沖縄
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] How does the folate dependent tRNA (m5U54) methyltransferase (TrmFO) recognize substrate tRNA?2014

    • Author(s)
      R. Yamagami, K. Yamashita, H. Nishimasu, C. Tomikawa, A. Ochi, C. Iwashita, R. Ishitani, O. Nureki, and H. Hori
    • Organizer
      25th tRNA conference
    • Place of Presentation
      オリンピアホテル、キリニ、ギリシャ
    • Year and Date
      2014-09-21 – 2014-09-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 葉酸依存性RNAメチル化酵素TrmFOの遺伝学的解析2014

    • Author(s)
      山上龍太、鴫 直樹、朝井信一、渡辺公綱、堀 弘幸
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      ウィンクあいち、名古屋、愛知県
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 葉酸依存性tRNA(m5U54)メチル化酵素TrmFOはどうやってtRNA中のU54を認識しているのか?

    • Author(s)
      山上龍太, 山下光輝, 西増弘志, 冨川千恵, 越智杏奈, 岩下智香子, 平田 章, 石谷隆一郎, 濡木 理, 堀 弘幸
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      愛媛県松山市
    • Related Report
      2013 Research-status Report
  • [Presentation] How does the folate dependent tRNA (m5U54) methyltransferase (TrmFO) recognize substrate tRNA?

    • Author(s)
      Ryota Yamagami, Koki Yamashita, Hiroshi Nishimasu, Chie Tomikawa1, Anna Ochi1, Chikako Iwashita, Ryuichiro Ishitani, Osamu Nureki, and Hiroyuki Hori
    • Organizer
      25thtRNA Conference
    • Place of Presentation
      ギリシャ
    • Related Report
      2013 Research-status Report
  • [Presentation] サーマス・サーモフィラス由来tRNA メチル化酵素TrmFOの基質認識機構

    • Author(s)
      山上龍太,山下光輝,西増 弘志,冨川 千恵,越智 杏奈,岩下 智香子,平田 章,石谷隆一郎,濡木 理,堀  弘幸
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      宮城県仙台市
    • Related Report
      2012 Research-status Report
  • [Presentation] Transfer RNA recognition mechanism of Thermus thermophilus folate/FAD-dependent tRNA methyltransferase (TrmFO)

    • Author(s)
      R. Yamagami, K. Yamashita, H. Nishimasu, C. Tomikawa, A. Ochi, C. Iwashita, A. Hirata, R. Ishitani, O. Nureki, and H. Hori
    • Organizer
      9th Extremophiles 2012
    • Place of Presentation
      スペイン
    • Related Report
      2012 Research-status Report
  • [Presentation] Substrate transfer RNA recognition mechanism of tRNA (m5U54) methyltransferase (TrmFO) based on the biochemical and structural analysis

    • Author(s)
      R. Yamagami, K. Yamashita, H. Nishimasu, C. Iwashita, A. Hirata, O. Nureki, and H. Hori
    • Organizer
      第2回モデル生物丸ごと一匹学会
    • Place of Presentation
      兵庫県佐用郡(SPring-8)
    • Related Report
      2012 Research-status Report
  • [Presentation] RNAメチル化酵素の構造と反応機構の多様性:トポロジカル・ノット型RNAメチル化酵素発見からの8年間

    • Author(s)
      堀 弘幸
    • Organizer
      第184回愛媛大学工学部応用化学科セミナー
    • Place of Presentation
      愛媛県松山市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] RNAメチル化酵素の構造と反応機構の多様性

    • Author(s)
      堀 弘幸
    • Organizer
      岐阜大学生命工学科セミナー
    • Place of Presentation
      岐阜県岐阜市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Remarks] 応用生物化学研究室ホームページ

    • URL

      http://www.ach.ehime-u.ac.jp/bchem/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 応用生物化学研究室HP

    • URL

      http://www.ehime-u.ac.jp/~achem/bchem/

    • Related Report
      2013 Research-status Report
  • [Remarks] 応用生物化学研究室ホームページ

    • URL

      http://www.ehime-u.ac.jp/~achem/bchem/

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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