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The possibility of Japanese origin of East Asian bird species and species diversity

Research Project

Project/Area Number 24657066
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Biodiversity/Systematics
Research InstitutionNational Museum of Nature and Science, Tokyo

Principal Investigator

NISHIUMI Isao  独立行政法人国立科学博物館, 動物研究部, 研究主幹 (90290866)

Co-Investigator(Renkei-kenkyūsha) MORI Sayaka  独立行政法人国立科学博物館, 分子生物多様性研究資料センター, 特定非常勤研究員 (70623867)
Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords種の起源 / 種分化 / DNAバーコード / 分散 / 系統地理 / 日本列島 / 鳥類 / ユーラシア / 東アジア / 起源 / 隠蔽種 / 系統地理学 / 国際研究者交流 / 韓国
Research Abstract

The possibility of Japanese origin of Asian bird species were examined mainly by molecular phylogenetic trees of mtDNA barcoding region. First, 184 Japanese breeding species consisting of 831 individuals were registered in a project BJNSM(Birds of Japan, NSMT) of BOLD database systems. We combined 11 bird projects and analyzed 699 species (4,636 individuals) containing of 234 Japanese breeding species (1,367 individuals). Phylogenetic trees of the all samples by NJ method showed that Japanese populations for 30 species has the highest genetic diversity in the species and placed the base of the species phylogenetic tree. This suggests that not a few Asian or Palearctic bird species were originated in Japan. Improvement of phylogeographic methods and analyses are required as the next step.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (40 results)

All 2014 2013 2012 Other

All Journal Article (12 results) (of which Peer Reviewed: 11 results) Presentation (16 results) (of which Invited: 2 results) Book (9 results) Remarks (3 results)

  • [Journal Article] DNA barcoding reveals 24 distinct lineages as cryptic bird species candidates in and around the Japanese Archipelago2014

    • Author(s)
      Saitoh T, Sugita N, Someya S, Iwami Y,Kobayashi S, Kamigaichi H, Higuchi A,Asai S, Yamamoto Y & Nishiumi I
    • Journal Title

      Molecular Ecology Resources

      Volume: Vol. 14 Issue: 1 Pages: 177-186

    • DOI

      10.1111/1755-0998.12282

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Incorporating color into integrative taxonomy: Analysis of the varied tit (Sittiparus varius) complex in East Asia2014

    • Author(s)
      McKay, B.D., H. L. Mays Jr, C.-T. Yao, D Wan, H. Higuchi and I. Nishiumi
    • Journal Title

      Systematic biology

      Volume: 63 Issue: 4 Pages: 505-517

    • DOI

      10.1093/sysbio/syu016

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA barcoding reveals 24 distinct lineages as cryptic bird species candidates in and around the Japanese Archipelago2014

    • Author(s)
      Saitoh, T., N. Sugita, S. Someya, Y. Iwami, S. Kobayashi, H. Kamigaichi, A. Higuchi, S. Asai, Y. Yamamoto and I. Nishiumi
    • Journal Title

      Molecular Ecology Resources

      Volume: 14

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tandem duplications in the c-terminal domain of the mesotocin receptor exclusively identified among East Eurasian thrushes2013

    • Author(s)
      Abe, H., I. Nishiumi and M. Inoue-Murayama
    • Journal Title

      Journal of molecular evolution

      Volume: 77 Pages: 260-267

    • NAID

      120005595850

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] An empirical comparison of character-based and coalescent-based approaches to species delimitation in a young avian complex2013

    • Author(s)
      McKay, B., H. L. Mays Jr, Y. Wu, H. Li,C.-T. Yao, I. Nishiumi and F. Zou
    • Journal Title

      Molecular Ecology

      Volume: 22 Pages: 4943-4957

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Geographical variation in mitochondrial DNA and vocalizations in two resident bird species in the Ryukyu Archipelago, Japan2013

    • Author(s)
      Hamao, S., N. Sugita and I. Nishiumi
    • Journal Title

      Bulletin of the National Museum of Nature and Science, Series A

      Volume: 39(1) Pages: 51-62

    • NAID

      40019655521

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distribution of two distinctive mitochondrial DNA lineages of the Japanese Robin Lucinia akahige across its breeding range around the Japanese islands2013

    • Author(s)
      Seki, S.-I., I. Nishiumi and T. Saitoh
    • Journal Title

      Zoological Science

      Volume: 29 Pages: 681-689

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 豊岡の飼育下および野外のコウノトリの遺伝的多様性と繁殖計画への示唆2012

    • Author(s)
      内藤和明・西海 功・大迫義人
    • Journal Title

      野生復帰

      Volume: 2 Pages: 57-62

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA バーコーディングと日本の鳥の種分類2012

    • Author(s)
      西海 功
    • Journal Title

      日本鳥学会誌

      Volume: 61 Pages: 223-237

    • NAID

      10031164399

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 分類学・系統地理学研究の歩みと成果2012

    • Author(s)
      西海 功
    • Journal Title

      日本鳥学会誌

      Volume: 61(特別) Pages: 35-38

    • Related Report
      2013 Final Research Report
  • [Journal Article] メボソムシクイPhylloscopus borealis(Blasius)の分類の再検討 : 3つの独立種を含むメボソムシクイ上種について2012

    • Author(s)
      齋藤武馬・西海 功・茂田良光・上田恵介
    • Journal Title

      日本鳥学会誌

      Volume: 61 Pages: 46-59

    • NAID

      10031164385

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNAバーコーディングと日本の鳥の種分類2012

    • Author(s)
      西海 功
    • Journal Title

      日本鳥学会誌

      Volume: 61 Pages: 223-237

    • NAID

      10031164399

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Japanese Islands may have contributed to the rich species diversity of East Asian birds : results of DNA barcoding2014

    • Author(s)
      Nishiumi, I. and C-H. Kim
    • Organizer
      26th International Ornithological Congress
    • Place of Presentation
      Rikkyo University, Tokyo
    • Related Report
      2013 Final Research Report
  • [Presentation] Japanese Islands may have contributed to the rich species diversity of East Asian birds: results of DNA barcoding2014

    • Author(s)
      Nishiumi, I. and C-H. Kim
    • Organizer
      26th International Ornithological Congress
    • Place of Presentation
      Rikkyo University
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヤマガラの系統地理と鬱陵島の亜種シマヤマガラの独立性2013

    • Author(s)
      杉田典正・金昌會・藤田薫・樋口広芳・西海功
    • Organizer
      日本鳥学会2013年度大会
    • Place of Presentation
      名城大学
    • Year and Date
      2013-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] 北海道のカササギ侵入個体群と大陸個体群の遺伝的構造解析2013

    • Author(s)
      森さやか・長谷川理・江口和洋・早矢仕有子・藤岡正博・Alexey Kryukov・西海功
    • Organizer
      日本鳥学会2013年度大会
    • Place of Presentation
      名城大学
    • Year and Date
      2013-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] クロツラヘラサギPlatalea minor の近縁種におけるコントロール領域の重複構造の解析2013

    • Author(s)
      曺炯柱・西海功・荒谷邦雄
    • Organizer
      日本鳥学会2013年度大会
    • Place of Presentation
      名城大学
    • Year and Date
      2013-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] 南西諸島における留鳥性鳥類4 種の遺伝的変異とさえずりの変異2013

    • Author(s)
      濱尾章二・杉田典正・西海功
    • Organizer
      日本鳥学会2013年度大会
    • Place of Presentation
      名城大学
    • Year and Date
      2013-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] 南西諸島の小鳥たちの地域変異―南へ行くほど黒くなる種、小さくなる種2013

    • Author(s)
      西海 功
    • Organizer
      平成25年度自然史学会連合講演会「みる!きく!さわる!博物館~五感で感じる生物多様性~」
    • Place of Presentation
      沖縄県立博物館
    • Year and Date
      2013-07-28
    • Related Report
      2013 Final Research Report
  • [Presentation] マイクロサテライトマーカーを用いた九州カササギ個体群の遺伝的構造解析2013

    • Author(s)
      森さやか・江口和洋・長谷川理・西海功
    • Organizer
      第60回日本生態学会大会
    • Place of Presentation
      静岡県コンベンションアーツセンター
    • Year and Date
      2013-03-08
    • Related Report
      2013 Final Research Report
  • [Presentation] Integrative taxonomy and biogeographic history of the Varied Tit (Sittiparus varius)2013

    • Author(s)
      McKay, B. D., H. L. Mays, C. Yao, D.Wan, and I. Nishiumi
    • Organizer
      The 131st Stated Meetings of the American Ornithologists' Union
    • Place of Presentation
      The Field Museum, Chicago
    • Related Report
      2013 Final Research Report
  • [Presentation] Integrative taxonomy and biogeographic history of the Varied Tit (Sittiparus varius)2013

    • Author(s)
      McKay, B. D., H. L. Mays, C. Yao, D. Wan, and I. Nishiumi
    • Organizer
      131st Stated Meetings of the American Ornithologists' Union
    • Place of Presentation
      Field Museum, Chicago
    • Related Report
      2013 Annual Research Report
  • [Presentation] マイクロサテライトDNA解析により解明された日本のライチョウの遺伝的分化2012

    • Author(s)
      西海 功・四方田紀恵・笠原里恵・中村浩志
    • Organizer
      第13回ライチョウ会議岐阜大会
    • Place of Presentation
      高山市民ホール
    • Year and Date
      2012-10-14
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA barcoding and the perspective of researches on species classification in Asia : Japanese Islands may have contributed to the rich species diversity in Asian birds2012

    • Author(s)
      Nishiumi, I.
    • Organizer
      Centennial Commemoration Symposium,Ornithological Society of Japan
    • Place of Presentation
      University of Tokyo
    • Year and Date
      2012-09-16
    • Related Report
      2013 Final Research Report
  • [Presentation] Microsatellite DNA analysis divided Japanese Rock Ptarmigan into four genetic clusters2012

    • Author(s)
      Nishiumi, I., N. Yomoda, S. Kasahara and H. Nakamura
    • Organizer
      The 12th International Grouse Symposium
    • Place of Presentation
      Matsumoto
    • Year and Date
      2012-07-22
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA barcoding and the perspective of researches on species classification in Asia: Japanese Islands may have contributed to the rich species diversity in Asian birds2012

    • Author(s)
      Isao Nishiumi
    • Organizer
      日本鳥学会
    • Place of Presentation
      東京大学本郷キャンパス
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Round table discussion 'New technology and regional topics for avian phylogeny'2012

    • Author(s)
      Saitoh, T., S-I. Seki, T. Hiraoka and I. Nishiumi
    • Organizer
      日本鳥学会
    • Place of Presentation
      東京大学本郷キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] 南西諸島の小鳥たちの地域変異―南へ行くほど黒くなる種、小さくなる種

    • Author(s)
      西海 功
    • Organizer
      平成25年度自然史学会連合講演会
    • Place of Presentation
      沖縄県立博物館
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] 鳥類分類表. 岩波生物学辞典 第5版2013

    • Author(s)
      西海 功
    • Total Pages
      2192
    • Publisher
      岩波書店
    • Related Report
      2013 Final Research Report
  • [Book] 行動生物学辞典(上田恵介他編)2013

    • Author(s)
      西海 功(分担執筆)
    • Total Pages
      637
    • Publisher
      東京化学同人
    • Related Report
      2013 Final Research Report
  • [Book] 分子が明かす鳥の世界2013

    • Author(s)
      西海 功
    • Publisher
      グリーン・パワー
    • Related Report
      2013 Final Research Report
  • [Book] 鳥類分類表. 岩波生物学辞典 第5版2013

    • Author(s)
      西海 功
    • Total Pages
      1
    • Publisher
      岩波書店
    • Related Report
      2013 Annual Research Report
  • [Book] グリーン・パワー 分子が明かす鳥の世界2013

    • Author(s)
      西海 功
    • Total Pages
      24
    • Publisher
      森林文化協会
    • Related Report
      2013 Annual Research Report
  • [Book] 企画展:鳥類の多様性―日本の鳥類研究の歴史と成果2012

    • Author(s)
      西海 功
    • Publisher
      うえの
    • Related Report
      2013 Final Research Report
  • [Book] 日本鳥学会100 周年記念展示「鳥類の多様性―日本の鳥類研究の歴史と成果」企画概要2012

    • Author(s)
      西海 功
    • Publisher
      日本鳥学会100周年記念行事2012
    • Related Report
      2013 Final Research Report
  • [Book] 日本鳥類目録改訂第7版2012

    • Author(s)
      柳澤紀夫・平岡 考・西海 功・齋藤武馬・綿貫 豊・山崎剛史・池長裕史・川上和人(編)
    • Total Pages
      438
    • Publisher
      日本鳥学会
    • Related Report
      2013 Final Research Report
  • [Book] 鳥類の分類―DNA による新知見と分類の行方.野鳥,7:2012

    • Author(s)
      西海 功
    • Related Report
      2013 Final Research Report
  • [Remarks] BOLD systems 内Public Data Portal

    • URL

      http://www.boldsystems.org

    • Related Report
      2013 Final Research Report
  • [Remarks] プロジェクト名:BJNSM: Birds of Japan,NSMT

    • Related Report
      2013 Final Research Report
  • [Remarks] 国立科学博物館 研究者紹介 西海 功

    • URL

      http://www.kahaku.go.jp/research/researcher/researcher.php?d=nishiumi

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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