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Vibrational coherence investigation of protein fluctuations for dynamic allostery

Research Project

Project/Area Number 24657107
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biophysics
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

KUBO Minoru  独立行政法人理化学研究所, 放射光科学総合研究センター, 専任研究員 (90392878)

Research Collaborator NAGATOMO Shigenori  筑波大学, 数理物質系化学域, 講師 (80373190)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2013: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2012: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords揺らぎ / 振動コヒーレンス / ヘモグロビン / タンパク質 / 低振動 / フェムト秒レーザー / 生体分子分光
Outline of Final Research Achievements

Vibrational coherence spectroscopy was applied to study the correlation between fluctuation of heme and its O2 affinity in hemoglobin (Hb). Damping times of low-frequency coherences (<200 cm-1) of heme, including doming mode coherence, were compared between 5 deoxyHbs with different O2 affinities, regulated by heterotropic effectors. The results showed that the damping times were not correlated with the O2 affinities. Instead, it was confirmed that the Fe-His stretching frequencies were correlated with the O2 affinities. Thus, this study supports Perutz model for the Hb function, although the role of fluctuation of the O2 channel remains to be examined.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (1 results)

All 2013

All Presentation (1 results) (of which Invited: 1 results)

  • [Presentation] 蛋白質水溶液を扱える高感度赤外分光装置の開発:酵素反応の生理条件下での測定を目指して2013

    • Author(s)
      久保稔
    • Organizer
      第36回溶液化学シンポジウム プレシンポジウム
    • Place of Presentation
      札幌
    • Related Report
      2013 Research-status Report
    • Invited

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Published: 2013-05-31   Modified: 2019-07-29  

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