• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Identification and structural-functional analysis of shuttle-type proteasome activator exhibiting molecular chaperone activity

Research Project

Project/Area Number 24657113
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionOkazaki Research Facilities, National Institutes of Natural Sciences

Principal Investigator

KATO Koichi  大学共同利用機関法人自然科学研究機構(岡崎共通研究施設), 岡崎統合バイオサイエンスセンター, 教授 (20211849)

Co-Investigator(Renkei-kenkyūsha) YAMAGUCHI Takumi  分子科学研究所, 生命・錯体分子科学研究領域, 助教 (60522430)
YAGI Maho  大学共同利用機関法人自然科学研究機構(岡崎共通研究施設), 岡崎統合バイオサイエンスセンター, 特任助教 (40608999)
SATOH Tadashi  名古屋市立大学, 薬学研究科(研究院), 准教授 (80532100)
Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsプロテアソーム / 4次構造 / 活性化因子 / シャペロン / 古細菌 / 四次構造
Research Abstract

Assembly of the eukaryotic 20S proteasome is not spontaneous self-organization but an ordered process involving several assembly chaperones, whereas that of the archaeal 20S proteasome involves spontaneous self-assembly. Recent genomic analysis identified archaeal homologs of the assembly chaperones, PbaA and PbaB. However, it remains unclear how such assembly chaperone-like proteins play an indispensable role in assembly of the proteasome subunit in archaea. This study revealed that PbaB actually functions as a proteasome activator. Furthermore, our integrative biochemical and biophysical approach including X-ray crystallography, electron microscopy, NMR spectroscopy, and small-angle neutron scattering provided mechanistic clues to the molecular action of the active complex formed between the PbaB homotetramer and 20S proteasome.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (38 results)

All 2014 2013 2012 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (31 results) (of which Invited: 7 results)

  • [Journal Article] Structural Basis for Proteasome Formation Controlled by an Assembly Chaperone Nas22014

    • Author(s)
      Satoh T, Saeki Y, Hiromoto T, Wang YH, Uekusa Y, Yagi H, Yoshihara H, Yagi-Utsumi M, Mizushima T, Tanaka K, Kato K
    • Journal Title

      Structure

      Volume: (掲載確定) Issue: 5 Pages: 731-743

    • DOI

      10.1016/j.str.2014.02.014

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Total Synthesis and Characterization of Thielocin B1 as a Protein-Protein Interaction Inhibitor of PAC3 Homodimer2014

    • Author(s)
      T. Doi, M. Yoshida, K. Ohsawa, K. Shin-ya, M. Takagi, Y. Uekusa, T. Yamaguchi, K. Kato, T. Hirokawa, T. Natsume
    • Journal Title

      Chem. Sci

      Volume: 5 Issue: 5 Pages: 1860-1868

    • DOI

      10.1039/c3sc53237b

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conformational characterization of a protein complex involving intrinsically disordered protein by small-angle neutron scattering using the inverse contrast matching method: a case study of interaction between α-synuclein and PbaB tetramer as a model chaperone2014

    • Author(s)
      Masaaki Sugiyama
    • Journal Title

      Journal Applied Crystallography

      Volume: 47 Issue: 1 Pages: 430-435

    • DOI

      10.1107/s1600576713033475

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] An archaeal homolog of proteasome assembly factor functions as a proteasome activator2013

    • Author(s)
      K. Kumoi, T. Satoh, K. Murata, T. Hiromoto, T. Mizushima, Y. Kamiya, M. Noda, S. Uchiyama, H. Yagi, and K. Kato
    • Journal Title

      PLoS ONE

      Volume: 8 Issue: 3 Pages: e60294-e60294

    • DOI

      10.1371/journal.pone.0060294

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spatial arrangement and functional role of α subunits of proteasome activator PA28 in hetero-oligomeric form.2013

    • Author(s)
      Sugiyama, M., Sahashi, H., Kurimoto, E., Takata, S., Yagi, H., Kanai, K., Sakata, E., Minami, Y., Tanaka, K., and Kato K.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 432 Issue: 1 Pages: 141-145

    • DOI

      10.1016/j.bbrc.2013.01.071

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] New crystal structure of proteasome-dedicated chaperone Rpnl4 at 1.6 Å resolution.2012

    • Author(s)
      Kim, S., Nishide, A., Saeki, Y., Takagi, K., Tanaka, K., Kato, K., Mizushima, T.
    • Journal Title

      Acta Cryst F

      Volume: 68 Issue: 5 Pages: 517-521

    • DOI

      10.1107/s1744309112011359

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural basis for specific recognition of Rpt1p, an ATPase subunit of the 26S proteasome, by a proteasome-dedicated chaperone Hsm3p2012

    • Author(s)
      Takagi, T., et al
    • Journal Title

      Journl of Biological Chemistry

      Volume: 287 Issue: 15 Pages: 12172-12182

    • DOI

      10.1074/jbc.m112.345876

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 生命分子の揺らぎと秩序形成独2014

    • Author(s)
      加藤晃一
    • Organizer
      日本学術振興会分子系の複合電子機能第181 委員会
    • Place of Presentation
      国際高等研究所(京都)
    • Year and Date
      2014-02-25
    • Related Report
      2013 Final Research Report
  • [Presentation] Mechanistic Insights into Dynamic Orchestration of Proteasomes2014

    • Author(s)
      K. Kato
    • Organizer
      Pure and Applied Chemistry International Conference (PACCON) 2014
    • Place of Presentation
      Khon Kaen(Thailand)
    • Year and Date
      2014-01-08
    • Related Report
      2013 Final Research Report
  • [Presentation] Mechanistic Insights into Dynamic Orchestration of Proteasomes2014

    • Author(s)
      Koichi Kato
    • Organizer
      Applied Chemistry International Conference (PACCON) 2014
    • Place of Presentation
      Khon Kaen,Thailand
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] An archaeal homolog of proteasome assembly chaperone forms a homotetramer and functions as proteasome activator2013

    • Author(s)
      K. Kumoi, T. Satoh, K. Murata, T.Hiromoto, T. Mizushima, Y. Kamiya, M.Noda, S. Uchiyama, M. Sugiyama, H. Yagi,and K. Kato
    • Organizer
      6^<th> Japan-Korea Seminars on Biomolecular Science : Experiments and Simulation
    • Place of Presentation
      岡崎コンファレンスセンター(愛知)
    • Year and Date
      2013-11-27
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural basis for proteasome formation mediated by assembly chaperone Nas22013

    • Author(s)
      T. Satoh, H. Yagi, Y-H. Wang, Y. Uekusa,T. Hiromoto, M. Yagi-Utsumi, T.Mizushima, and K. Kato
    • Organizer
      6 ^<th> Japan-Korea Seminars on Biomolecular Science : Experiments and Simulation
    • Place of Presentation
      岡崎コンファレンスセンター(愛知)
    • Year and Date
      2013-11-27
    • Related Report
      2013 Final Research Report
  • [Presentation] Interaction mode of a proteasome assembly chaperone Nas2 with the proteasome Rpt5 subunit2013

    • Author(s)
      Y-H. Wang, T. Satoh, T. Hiromoto, Y.Uekusa, H. Yagi, M. Yagi-Utsumi, T.Mizushima, Y. Saeki, K. Tanaka, and K.Kato
    • Organizer
      山田研究会・統合バイオサイエンスシンポジウム
    • Place of Presentation
      伊良湖
    • Year and Date
      2013-11-20
    • Related Report
      2013 Final Research Report
  • [Presentation] Mechanistic insights into the proteasome orchestration by a proteasome assembly chaperone Nas22013

    • Author(s)
      T. Satoh, Y. Uekusa, T. Hiromoto, H. Yagi,M. Yagi-Utsumi, T. Mizushima, Y. Saeki,K. Tanaka, and K. Kato
    • Organizer
      7th International Conference on StructuralGenomics (ICSG2013-SLS)
    • Place of Presentation
      札幌
    • Year and Date
      2013-08-01
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural insights into proteasome orchestration mechanism through a proteasome assembly factor Nas22013

    • Author(s)
      T. Satoh, Y. Uekusa, T. Hiromoto, H. Yagi,M. Yagi-Utsumi, T. Mizushima, Y. Saeki,K. Tanaka, and K. Kato
    • Organizer
      8 ^<th>Asian Biophysics Association Symposium (ABA Jeju 2013)
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2013-05-27
    • Related Report
      2013 Final Research Report
  • [Presentation] プロテアソームの分子集合における集合因子Nas2 の機能発現機構2013

    • Author(s)
      佐藤匡史、植草義徳、廣本武史、矢木宏和、矢木真穂、水島恒裕、佐伯泰、田中啓二、加藤晃一
    • Organizer
      第77回日本生化学会中部支部例会・シンポジウム
    • Place of Presentation
      名古屋
    • Year and Date
      2013-05-25
    • Related Report
      2013 Final Research Report
  • [Presentation] 生命分子のダイナミクスと自己組織化国際高等研究所研究プロジェクト2013

    • Author(s)
      加藤晃一
    • Organizer
      「分子基盤に基づく生体機能への揺らぎとダイナミックネットワークの解明」第1回研究会
    • Place of Presentation
      国際高等研究所(京都)
    • Year and Date
      2013-04-21
    • Related Report
      2013 Final Research Report
  • [Presentation] プロテアソーム集合因子Nas2 を介したプロテアソームの分子集合機構の構造基盤2013

    • Author(s)
      佐藤匡史、植草義徳、廣本武史、矢木真穂、矢木宏和、水島恒裕、佐伯泰、田中啓二、加藤晃一
    • Organizer
      日本薬学会 第133回年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2013-03-29
    • Related Report
      2013 Final Research Report
  • [Presentation] NMR とSANS によるタンパク質の動的構造解析2013

    • Author(s)
      加藤晃一
    • Organizer
      中性子連携研究会
    • Place of Presentation
      京都大学東京オフィス(東京)
    • Year and Date
      2013-03-13
    • Related Report
      2013 Final Research Report
  • [Presentation] プロテアソームを構成するサブユニットとその集合因子Ump1p の相互作用解析2013

    • Author(s)
      大川慶祐、矢木宏和、植草義徳、矢木真穂、水島恒裕、佐藤匡史、佐伯泰、田中啓二、加藤晃一
    • Organizer
      日本生物物理学会中部支部講演会
    • Place of Presentation
      名古屋大学(愛知)
    • Year and Date
      2013-02-19
    • Related Report
      2013 Final Research Report
  • [Presentation] 生命分子複合体の動態解明への実験的アプローチ2013

    • Author(s)
      加藤晃一
    • Organizer
      京都大学原子炉実験所 粒子線基礎物性研究特別講演会
    • Place of Presentation
      京都大学原子炉実験所(大阪)
    • Year and Date
      2013-02-12
    • Related Report
      2013 Final Research Report
  • [Presentation] ATP 非依存性シャペロンの構造ダイナミクスと機能発現メカニズム2012

    • Author(s)
      加藤晃一
    • Organizer
      新学術領域「揺らぎと生体機能」「水和とATP」合同公開シンポジウム「ゆらぎと水-生命のエネルギーと分子機構を探る」
    • Place of Presentation
      大阪ガーデンパレス(大阪)
    • Year and Date
      2012-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] 重水素化標識を用いたタンパク質複合体の4次構造ダイナミクスの研究2012

    • Author(s)
      加藤晃一、杉山正明
    • Organizer
      J-PARC プロジェクト課題「生体高分子の構造-ダイナミクス相関の解析」キックオフ会議
    • Place of Presentation
      J-PARCセンター(茨城)
    • Year and Date
      2012-07-19
    • Related Report
      2013 Final Research Report
  • [Presentation] プロテアソーム19S 制御因子複合体形成シャペロンHsm3 の構造解析2012

    • Author(s)
      高木賢治、金相佑、加藤晃一、田中啓二、佐伯泰、水島恒裕
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知)
    • Year and Date
      2012-06-20
    • Related Report
      2013 Final Research Report
  • [Presentation] 新規プロテアソーム活性化因子PbaB の構造と機能2012

    • Author(s)
      雲井健太郎、佐藤匡史、矢木宏和、廣本武史、水島恒裕、内山進、野田勝紀、村田和義、神谷由紀子、加藤晃一
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知)
    • Year and Date
      2012-06-20
    • Related Report
      2013 Final Research Report
  • [Presentation] 古細菌タンパク質PbaB によるATP 非依存的プロテアソーム活性化機構の構造基盤2012

    • Author(s)
      雲井健太郎、佐藤匡史、廣本武史、水島恒裕、神谷由紀子、野田勝紀、内山進、村田和義、矢木宏和、加藤晃一
    • Organizer
      第76回日本生化学会 中部支部例会・シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンター(愛知)
    • Year and Date
      2012-05-26
    • Related Report
      2013 Final Research Report
  • [Presentation] 生命分子の揺らぎと秩序形成

    • Author(s)
      Koichi Kato
    • Organizer
      (独)日本学術振興会 分子系の複合電子機能第181委員会
    • Place of Presentation
      国際高等研究所(京都府)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] An archaeal homolog of proteasome assembly chaperone forms a homotetramer and functions as proteasome activator

    • Author(s)
      Kentaro Kumoi, Tadashi Satoh, Kazuyoshi Murata, Takeshi Hiromoto, Tsunehiro Mizushima, Yukiko Kamiya, Masanori Noda, Susumu Uchiyama, Masaaki Sugiyama, Hirokazu Yagi, Koichi Kato
    • Organizer
      6th Japan-Korea Seminars on Biomolecular Science: Experiments and Simulation
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 生命分子のダイナミクスと自己組織化

    • Author(s)
      加藤晃一
    • Organizer
      「分子基盤に基づく生体機能への揺らぎとダイナミックネットワークの解明」第1回研究会
    • Place of Presentation
      国際高等研究所(京都府)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] プロテアソーム集合因子Nas2を介したプロテアソームの分子集合機構の構造基盤

    • Author(s)
      佐藤匡史,植草義徳,廣本武史,矢木真穂,矢木宏和,水島恒裕,佐伯 泰,田中啓二,加藤晃一
    • Organizer
      日本薬学会 第133回年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2012 Research-status Report
  • [Presentation] NMRとSANSによるタンパク質の動的構造解析

    • Author(s)
      加藤晃一
    • Organizer
      中性子連携研究会
    • Place of Presentation
      京都大学東京オフィス(東京)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] プロテアソームを構成するサブユニットとその集合因子Ump1pの相互作用解析

    • Author(s)
      大川慶祐,矢木宏和,植草義徳,矢木真穂,水島恒裕,佐藤匡史,佐伯 泰,田中啓二,加藤晃一
    • Organizer
      日本生物物理学会中部支部講演会
    • Place of Presentation
      名古屋大学野依記念学術交流館(愛知)
    • Related Report
      2012 Research-status Report
  • [Presentation] 生命分子複合体の動態解明への実験的アプローチ

    • Author(s)
      加藤晃一
    • Organizer
      京都大学原子炉実験所 粒子線基礎物性研究特別講演会
    • Place of Presentation
      京都大学原子炉実験所(大阪)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] ATP非依存性シャペロンの構造ダイナミクスと機能発現メカニズム

    • Author(s)
      加藤晃一
    • Organizer
      新学術領域「揺らぎと生体機能」「水和とATP」合同公開シンポジウム 「ゆらぎと水-生命のエネルギーと分子機構を探る」
    • Place of Presentation
      大阪ガーデンパレス(大阪)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 重水素化標識を用いたタンパク質複合体の4次構造ダイナミクスの研究

    • Author(s)
      加藤晃一,杉山正明
    • Organizer
      J-PARCプロジェクト課題「生体高分子の構造-ダイナミクス相関の解析」キックオフ会議
    • Place of Presentation
      J-PARCセンター(茨城)
    • Related Report
      2012 Research-status Report
  • [Presentation] プロテアソーム19S 制御因子複合体形成シャペロン Hsm3の構造解析

    • Author(s)
      高木賢治,金 相佑,加藤晃一,田中啓二,佐伯 泰,水島恒裕
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知)
    • Related Report
      2012 Research-status Report
  • [Presentation] 新規プロテアソーム活性化因子 PbaB の構造と機能

    • Author(s)
      雲井健太郎,佐藤匡史,矢木宏和,廣本武史,水島恒裕,内山 進,野田勝紀,村田和義,神谷由紀子,加藤晃一
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知)
    • Related Report
      2012 Research-status Report
  • [Presentation] 古細菌タンパク質PbaBによるATP非依存的プロテアソーム活性化機構の構造基盤

    • Author(s)
      雲井健太郎,佐藤匡史,廣本武史,水島恒裕,神谷由紀子,野田勝紀,内山 進,村田和義,矢木宏和,加藤晃一
    • Organizer
      第76回日本生化学会 中部支部例会・シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンター(愛知)
    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi