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Function of a novel tRNA-like small RNA

Research Project

Project/Area Number 24657114
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionHirosaki University

Principal Investigator

MUTO Akira  弘前大学, 農学生命科学部, 研究員 (80034635)

Co-Investigator(Kenkyū-buntansha) CHISATO Ushida  弘前大学, 農学生命科学部, 准教授 (50250593)
姫野 俵太  弘前大学, 農学生命科学部, 教授 (80208785)
Co-Investigator(Renkei-kenkyūsha) HYOUTA Himeno  弘前大学, 農学生命科学部, 教授 (80208785)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordstRNA / mRNA / small RNA / E. coli / translation / transcription / 低分子RNA / 大腸菌 / protein / O157 / 遺伝子発現 / 翻訳 / 転写 / タンパク質 / ストレス
Outline of Final Research Achievements

We have found a tRNA-like sequence, which is highly conserved in the genomes of all the strains of Escherichia coli. Experiments to see the product of the sequence revealed that this is a part of a gene encoding a short protein. This is the first discovery of the bacteria gene including tRNA-like sequence.
We have prepared the mutant strain lacking the tRNA-like sequence, and the growth of the deletion mutant was compered with the wild-type strain under various culture conditions. The results showed that the deletion mutant cells are more sensitive to several antibiotics, such as streptomycin, kanamycine etc., which specifically interact with A-site of 30S ribosome, suggesting that the gene product is somehow involved in the translation process in the cell.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (30 results)

All 2015 2014 2013 2012 Other

All Journal Article (13 results) (of which Peer Reviewed: 12 results,  Open Access: 5 results,  Acknowledgement Compliant: 4 results) Presentation (14 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence.2014

    • Author(s)
      Yang, Z., Guo, Q., Goto, S., Chen, Y., Li, N., Yan, K., Zhang, Y., Muto, A., Deng, H., Himeno, H., Lei, J. & Gao, N.:
    • Journal Title

      Protein Cell

      Volume: 5 Issue: 5 Pages: 394-407

    • DOI

      10.1007/s13238-014-0044-1

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] tmRNA-mediated trans-translation as the major ribosome rescue system in a bacterial cell.2014

    • Author(s)
      Himeno, H., Kurita, D. & Muto, A.
    • Journal Title

      Frontiers Genet.

      Volume: 5 Pages: 66-74

    • DOI

      10.3389/fgene.2014.00066

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rejection of tmRNA• SmpB after GTP hydrolysis by EF-Tu on ribosomes stalled on intact mRNA.2014

    • Author(s)
      Kurita, D., Miller, M., Muto, A., Buskirk, A. & Himeno, H.
    • Journal Title

      RNA

      Volume: 20 Issue: 11 Pages: 1706-1714

    • DOI

      10.1261/rna.045773.114

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ArfA recognizes the lack of mRNA in the mRNA channel after RF2 binding for ribosome rescue.2014

    • Author(s)
      Daisuke Kurita, Yuhei Chadani, Tatsuhiko Abo, Hyouta Himeno
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Issue: 21 Pages: 13339-13352

    • DOI

      10.1093/nar/gku1069

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ribosome rescue systems in bacteria. Biochimie2014

    • Author(s)
      Himeno, H., Nameki, N., Kurita, D., Muto, A. & Abo T.
    • Journal Title

      Biochimie

      Volume: pii: S0300-9084(14) Pages: 00355-1

    • DOI

      10.1016/j.biochi.2014.11.014

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Mechanism of trans-translation revealed by in vitro studies.2014

    • Author(s)
      Himeno, H., Kurita, D. & Muto, A.
    • Journal Title

      Frontiers in Microbiology

      Volume: 5 Pages: 1-11

    • DOI

      10.3389/fmicb.2014.00065

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Impairment of ribosome maturation or function confers salt resistance on Escherichia coli cells.2013

    • Author(s)
      Hase, Y., Tarusawa, T., Muto, A. & Himeno, H.
    • Journal Title

      PLoS ONE

      Volume: 8(5) Issue: 5 Pages: e65747-e65747

    • DOI

      10.1371/journal.pone.0065747

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process.2013

    • Author(s)
      Guo, Q., Goto, S., Chen, Y., Feng, B., Xu, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
    • Journal Title

      Nucleic Acids Res.

      Volume: 41 Issue: 4 Pages: 2609-2620

    • DOI

      10.1093/nar/gks1256

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics2013

    • Author(s)
      Sakai H, Lee SS, Tanaka T, Numa H, Kim J, Kawahara Y, Wakimoto H, Yang CC, Iwamoto M, Abe T, Yamada Y, Muto A, Inokuchi H, Ikemura T, Matsumoto T, Sasaki T, Itoh T.
    • Journal Title

      Plant Cell Physiol.

      Volume: 52 Issue: 2 Pages: e6-e6

    • DOI

      10.1093/pcp/pcs183

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Myrcrplasma mobile2013

    • Author(s)
      Taniguchi T, Miyauchi K, Nakane D, Miyata M, Muto A, Nishimura S, Suzuki T
    • Journal Title

      Nucleic Acids Research

      Volume: 41 Issue: 4 Pages: 2621-2631

    • DOI

      10.1093/nar/gks1344

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] GTPases involved in bacterial ribosome maturation2013

    • Author(s)
      Goto, S., Muto, A., Himeno, H
    • Journal Title

      J. Biochem.

      Volume: 未定 Issue: 5 Pages: 403-414

    • DOI

      10.1093/jb/mvt022

    • NAID

      40019646739

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 2つの機能を有するtmRNAによる細菌の翻訳解消システム2013

    • Author(s)
      姫野俵太、栗田大輔、武藤昱
    • Journal Title

      実験医学

      Volume: 31

    • Related Report
      2012 Research-status Report
  • [Journal Article] In vitro trans-translation assay.2012

    • Author(s)
      Kurita, D., Muto, A., Himeno, H.
    • Journal Title

      Methods in Molecular Biology

      Volume: 905 Pages: 311-325

    • DOI

      10.1007/978-1-61779-949-5_20

    • ISBN
      9781617799488, 9781617799495
    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] ArfAとRF2による翻訳停滞リボソームの解消機構の解明2015

    • Author(s)
      栗田大輔、武藤昱、阿保達彦、姫野俵太
    • Organizer
      第3回リボソームミーティング
    • Place of Presentation
      宮崎市
    • Year and Date
      2015-03-17 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大腸菌における翻訳不完全性がもたらす塩耐性獲得機構の解明2014

    • Author(s)
      伊藤汐音、樽澤武房、後藤史門、武藤あきら、姫野俵太
    • Organizer
      第11回21世紀大腸菌研究会
    • Place of Presentation
      盛岡市
    • Year and Date
      2014-06-05 – 2014-06-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大腸菌30S サブユニットの生合成後期に関与する一連の因子について2014

    • Author(s)
      後藤史門、武藤昱、姫野俵太
    • Organizer
      第11回21世紀大腸菌研究会
    • Place of Presentation
      盛岡市
    • Year and Date
      2014-06-05 – 2014-06-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] RsgA(リボソーム小サブユニット依存GTP加水分解酵素)の機能およびリボソームとの相互作用2013

    • Author(s)
      後藤史門、長谷要一、菊地岳志、栗田大輔、武藤昱、竹本千重、横山茂之、Sean R. Connell、Paola Fucini、姫野俵太
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      松山
    • Related Report
      2013 Research-status Report
  • [Presentation] Recognition of mRNA length on the ribosome by tmRNA and SmpB.2013

    • Author(s)
      Kurita, D., Miller, M.R., Muto, A., Buskirk, A.R. & Himeno, H.
    • Organizer
      Ribosomes Conference 2013
    • Place of Presentation
      Napa Valley, California
    • Related Report
      2013 Research-status Report
  • [Presentation] リボソームを介した浸透圧耐性機構2013

    • Author(s)
      樽澤武房
    • Organizer
      第2回リボソームミーティング
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] 細菌リボソーム30Sサブユニットの生合成に関与する因子群の機能2013

    • Author(s)
      後藤史門
    • Organizer
      第2回リボソームミーティング
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] tmRNA/SmpBによる停滞したリボソームの認識機構2013

    • Author(s)
      栗田大輔
    • Organizer
      第2回リボソームミーティング
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] The first translocation in trans-translation2012

    • Author(s)
      Takada, K.
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] 線虫SL1トランス-スプライシングは生殖細胞でより活発?2012

    • Author(s)
      加藤新
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] Interplay of a GTPase and a ribosome-binding factor on the 30S subunit during a late stage of the bacterial ribosome biosynthesis2012

    • Author(s)
      Goto, S.
    • Organizer
      The 9th International Conference on Ribosome Synthesis
    • Place of Presentation
      Banff
    • Related Report
      2012 Research-status Report
  • [Presentation] Decoding system for the AUA codon by tRNAIle bearing the UAU anticodon in Mycoplasma mobile2012

    • Author(s)
      Taniguchi, T.
    • Organizer
      XXIV tRNA conference
    • Place of Presentation
      Olmue, Chile
    • Related Report
      2012 Research-status Report
  • [Presentation] GTPase RsgAの機能と大腸菌リボソーム生合成の過程

    • Author(s)
      後藤史門、武藤あきら、姫野俵太
    • Organizer
      第10回大腸菌研究会
    • Place of Presentation
      修善寺
    • Related Report
      2013 Research-status Report
  • [Presentation] tmRNA:non-coding RNAとcoding RNAのハイブリッド

    • Author(s)
      姫野俵太、栗田大輔、武藤昱
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
  • [Book] 生命分子を統合するRNAーその秘められた役割と制御機構2013

    • Author(s)
      姫野俵太、栗田大輔、武藤昱
    • Total Pages
      7
    • Publisher
      羊土社
    • Related Report
      2013 Research-status Report
  • [Book] 弘前大学知の散歩道2012

    • Author(s)
      姫野俵太
    • Total Pages
      9
    • Publisher
      弘前大学出版会
    • Related Report
      2012 Research-status Report
  • [Remarks] 弘前大学農学生命科学部分子生命科学科分子生物学研究室

    • URL

      http://hirosaki-rna.org/

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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