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Regulation of pre-mRNA splicing by ribosomal proteins

Research Project

Project/Area Number 24657116
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Molecular biology
Research InstitutionTokyo Medical and Dental University

Principal Investigator

KUROYANAGI Hidehito  東京医科歯科大学, 難治疾患研究所, 准教授 (30323702)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsリボソームタンパク質 / mRNA前駆体 / 選択的スプライシング / 線虫 / 蛍光レポーター / 自己制御 / NMD / リボゾームタンパク質 / mRNAプロセシング
Research Abstract

Expression of eight out of ~80 ribosomal protein genes in a nematode C. elegans have been shown to be regulated at the pre-mRNA processing level. Among them, RPL-1 has been shown to directly and specifically bind to a cis-element termed L10ARE to switch the splicing pattern of its own pre-mRNA. The orthologous gene RPL10A in vertebrates has also been shown to regulate its own pre-mRNA splicing via L10ARE, demonstrating that the splicing autoregulation of the genes encoding the ribosomal protein L10A is evolutionarily conserved.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (27 results)

All 2014 2013 2012 Other

All Journal Article (10 results) (of which Peer Reviewed: 8 results) Presentation (14 results) (of which Invited: 2 results) Remarks (3 results)

  • [Journal Article] Comprehensive analysis of mutually exclusive alternative splicing in C. elegans2014

    • Author(s)
      Kuroyanagi H, Takei S, Suzuki Y
    • Journal Title

      Worm

      Volume: 3

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] New Technology選択的スプライシング可視化システム2013

    • Author(s)
      木村まり子、黒柳秀人
    • Journal Title

      Medical Science Digest

      Volume: 39 Pages: 502-503

    • Related Report
      2013 Final Research Report
  • [Journal Article] Switch-like regulation of tissue-specific alternative pre-mRNA processing patterns revealed by customized fluorescence reporters2013

    • Author(s)
      Hidehito Kuroyanagi
    • Journal Title

      Worm

      Volume: 2

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] CELF family RNA-binding protein UNC-75 regulates two sets of mutually exclusive exons of the unc-32 gene in neuron-specific manners in Caenorhabditis elegans2013

    • Author(s)
      Kuroyanagi H, Watanabe Y, Hagiwara M
    • Journal Title

      PLoS Genetics

      Volume: 9 Issue: 2 Pages: e1003337-e1003337

    • DOI

      10.1371/journal.pgen.1003337

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Position-dependent and neuron-specific splicing regulation by the CELF family RNA-binding protein UNC-75 in Caenorhabditis elegans2013

    • Author(s)
      Kuroyanagi H, Watanabe Y, Suzuki Y, Hagiwara M
    • Journal Title

      Nucleic Acids Research

      Volume: 41 Issue: 7 Pages: 4015-4025

    • DOI

      10.1093/nar/gkt097

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Yes-associated protein homolog, YAP-1, is involved in the thermotolerance and aging in the nematode Caenorhabditis elegans2013

    • Author(s)
      Iwasa H, Maimaiti S, Kuroyanagi H, Kawano S, Inami T, Ikeda M, Nakagawa K, Hata Y
    • Journal Title

      Experimental Cell Research

      Volume: 319 Issue: 7 Pages: 931-945

    • DOI

      10.1016/j.yexcr.2013.01.020

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of RSF-1, the Caenorhabditis elegans homolog of the Ras-association domain family protein 12013

    • Author(s)
      Iwasa H, Kuroyanagi H, Maimaiti S, Ikeda M, Nakagawa K, Hata Y
    • Journal Title

      Experimental Cell Research

      Volume: 319 Issue: 3 Pages: 1-11

    • DOI

      10.1016/j.yexcr.2012.10.008

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] New Technology 選択的スプライシング可視化システム2013

    • Author(s)
      木村まり子、黒柳秀人
    • Journal Title

      Medical Science Digest

      Volume: 39 Pages: 502-503

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Switch-like regulation of tissue-specific alternative pre-mRNA processing patterns revealed by customized fluorescence reporters2013

    • Author(s)
      Hidehito Kuroyanagi
    • Journal Title

      Worm

      Volume: 2 Issue: 3 Pages: e23834-e23834

    • DOI

      10.4161/worm.23834

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Muscle-Specific Splicing Factors ASD-2 and SUP-12 Cooperatively Switch Alternative Pre-mRNA Processing Patterns of the ADF/Cofilin Gene in Caenorhabditis elegans2012

    • Author(s)
      Ohno G, Ono K, Togo M, Watanabe Y, Ono S, Hagiwara M, Kuroyanagi H
    • Journal Title

      PLoS Genetics

      Volume: 8 Issue: 10 Pages: e1002991-e1002991

    • DOI

      10.1371/journal.pgen.1002991

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] mRNA前駆体の選択的プロセシングパターンを可視化して解析する2013

    • Author(s)
      黒柳秀人
    • Organizer
      日本農芸化学会中部支部第169回例会若手シンポジウム
    • Place of Presentation
      岐阜大学サテライトキャンパス、岐阜市
    • Year and Date
      2013-11-09
    • Related Report
      2013 Final Research Report
  • [Presentation] 線虫rp遺伝子の選択的スプライシング制御機構の解析2013

    • Author(s)
      武井理美
    • Organizer
      東京地区線虫勉強会
    • Place of Presentation
      東京大学浅野キャンパス、東京都文京区
    • Year and Date
      2013-09-28
    • Related Report
      2013 Final Research Report
  • [Presentation] 蛍光タンパク質レポーターを用いたmRNA前駆体の転写後プロセシング制御機構の遺伝学的解析2013

    • Author(s)
      黒柳秀人
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶應義塾大学日吉キャンパス、横浜市
    • Related Report
      2013 Final Research Report
  • [Presentation] 線虫rp遺伝子の選択的スプライシング制御機構の解析2013

    • Author(s)
      武井理美,黒柳秀人
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      松山市
    • Related Report
      2013 Final Research Report
  • [Presentation] Protein L1 regulates alternative splicing of its own pre-mRNA2013

    • Author(s)
      Takei, S., & KUROYANAGI, H. Ribosomal
    • Organizer
      19th International C. elegans Meeting
    • Place of Presentation
      米国カリフォルニア州ロサンゼルス市
    • Related Report
      2013 Final Research Report
  • [Presentation] mRNA前駆体の選択的プロセシングパターンを可視化して解析する2013

    • Author(s)
      黒柳秀人
    • Organizer
      日本農芸化学会中部支部第169回例会若手シンポジウム
    • Place of Presentation
      岐阜大学 サテライトキャンパス
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 線虫rp遺伝子の選択的スプライシング制御機構の解析2013

    • Author(s)
      武井理美
    • Organizer
      東京地区線虫勉強会
    • Place of Presentation
      東京大学浅野キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] 蛍光タンパク質レポーターを用いたmRNA前駆体の転写後プロセシング制御機構の遺伝学的解析2013

    • Author(s)
      黒柳秀人
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶應義塾大学 日吉キャンパス
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 線虫 rp 遺伝子の選択的スプライシング制御機構の解析2013

    • Author(s)
      武井 理美, 黒柳 秀人
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      愛媛県・県民文化会館・ひめぎんホール
    • Related Report
      2013 Annual Research Report
  • [Presentation] Ribosomal Protein L1 regulates alternative splicing of its own pre-mRNA2013

    • Author(s)
      Takei, S., & KUROYANAGI, H.
    • Organizer
      19th International C. elegans Meeting
    • Place of Presentation
      University of California, Los Angeles
    • Related Report
      2013 Annual Research Report
  • [Presentation] Muscle-Specific Splicing Factors ASD-2 and SUP-12 Cooperatively Switch Alternative Pre-mRNA Processing Patterns of the ADF/Cofilin Gene in C. elegans2012

    • Author(s)
      Genta Ohno, Kanako Ono, Marina Togo, Yohei Watanabe, Shoichiro Ono, Masatoshi Hagiwara, Hidehito Kuroyanagi
    • Organizer
      Cold Spring Harbor Asia conferences on RNA Biology
    • Place of Presentation
      中国蘇州市
    • Related Report
      2013 Final Research Report
  • [Presentation] 普遍的に発現するRNAポリメラーゼII会合タンパク質LST-3はmRNA前駆体の転写と選択的スプライシングを制御する2012

    • Author(s)
      黒柳秀人,都甲麻理奈,渡辺要平,萩原正敏
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学
    • Related Report
      2013 Final Research Report
  • [Presentation] 普遍的に発現するRNAポリメラーゼII会合タンパク質LST-3はmRNA前駆体の転写と選択的スプライシングを制御する.2012

    • Author(s)
      黒柳秀人、都甲麻理奈、渡辺要平、萩原正敏
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学百周年記念会館川内萩ホール
    • Related Report
      2012 Research-status Report
  • [Presentation] Muscle-Specific Splicing Factors ASD-2 and SUP-12 Cooperatively Switch Alternative Pre-mRNA Processing Patterns of the ADF/Cofilin Gene in C. elegans.2012

    • Author(s)
      Genta Ohno, Kanako Ono, Marina Togo, Yohei Watanabe, Shoichiro Ono, Masatoshi Hagiwara, Hidehito Kuroyanagi
    • Organizer
      Cold Spring Harbor Asia conferences on RNA Biology
    • Place of Presentation
      Suzhou Dushu Lake Conference Center、蘇州市、中国
    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.tmd.ac.jp/end/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 東京医科歯科大学 フロンティア研究室 遺伝子発現制御学

    • URL

      http://www.tmd.ac.jp/end/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 遺伝子発現制御研究室 研究内容の紹介

    • URL

      http://www.tmd.ac.jp/end/research/index.html

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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