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Mechanism of how core transcription factors affect the fate of mRNA

Research Project

Project/Area Number 24657119
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionYokohama City University

Principal Investigator

KOKUBO Tetsuro  横浜市立大学, 生命医科学研究科, 教授 (10271587)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordstranscription / TFIID / SAGA / mRNA / cyclin / gene regulation / cell morphogenesis / GTF / 転写調節 / 転写因子 / TBP / 局所翻訳制御 / 出芽酵母 / TAF
Outline of Final Research Achievements

TFIID, the largest GTF composed of TBP and 14 TAFs, and its related complex SAGA play critical roles in transcriptional activation by regulating TBP-DNA interactions. Previously,we suggested an intriguing possibility that CLN2 mRNA generated by TFIID or SAGA (designated as CLN2 mRNA[TFIID] or [SAGA], respectively) could produce two types of Cln2p that carry distinct functions.
Here we demonstrate that TAND (Taf1p N-terminal domain) of TFIID may determine the production ratio between CLN2 mRNA[TFIID] and [SAGA], and also that the latter mRNA may be specifically regulated by Ssd1p and RAM (Regulation of Ace2p activity and cellular Morphogenesis) signaling pathway at the translational level. These results support the idea that the selection of core transcription factor (e.g. TFIID versus SAGA) may affect the fate of mRNA generated even from a single promoter.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (12 results)

All 2015 2014 2013 2012 Other

All Journal Article (7 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 1 results,  Open Access: 1 results) Presentation (5 results)

  • [Journal Article] The physical size of transcription factors is key to transcriptional regulation in chromatin domains.2015

    • Author(s)
      Kazuhiro Maeshima, Kazunari Kaizu, Sachiko Tamura, Tadasu Nozaki, Tetsuro Kokubo, Koichi Takahashi.
    • Journal Title

      J. Phys.: Condens. Matter

      Volume: 27 Issue: 6 Pages: 064116-064116

    • DOI

      10.1088/0953-8984/27/6/064116

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Both HMG boxes in Hmo1 are essential for DNA binding in vitro and in vivo.2015

    • Author(s)
      A. Higashino, Y. Shiwa, H. Yoshikawa, T. Kokubo, K. Kasahara
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 79(3) Issue: 3 Pages: 384-393

    • DOI

      10.1080/09168451.2014.978258

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation2013

    • Author(s)
      Anandapadamanaban M, Andresen C, Helander S, Ohyama Y, Siponen MI, Lundström P, Kokubo T, Ikura M, Moche M, Sunnerhagen M
    • Journal Title

      Nat Struct Mol Biol

      Volume: 20(8) Issue: 8 Pages: 1008-14

    • DOI

      10.1038/nsmb.2611

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Transcription in Eukaryote (review)2013

    • Author(s)
      T. Kokubo
    • Journal Title

      Encyclopedia of Systems Biology

      Volume: in press

    • Related Report
      2012 Research-status Report
  • [Journal Article] Transcription Initiation in Eukaryote (review)2013

    • Author(s)
      T. Kokubo
    • Journal Title

      Encyclopedia of Systems Biology

      Volume: in press

    • Related Report
      2012 Research-status Report
  • [Journal Article] Mechanisms of Transcriptional Activation and Repression (review)2013

    • Author(s)
      T. Kokubo
    • Journal Title

      Encyclopedia of Systems Biology

      Volume: in press

    • Related Report
      2012 Research-status Report
  • [Journal Article] Identification and recombinant analysis of botrocetin-2, a snake venom cofactor for von Willebrand factor-induced platelet agglutination2012

    • Author(s)
      Yamamoto-Suzuki Y, Sakurai Y, Fujimura Y, Matsumoto M, Hamako J, Kokubo T, Kitagawa H, Kawsar SMA, Fujii Y, Ozeki Y, Matsushita F, Matsui T
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 26 Pages: 5329-5338

    • DOI

      10.1021/bi300442c

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 出芽酵母においてgal2 変異とミトコンドリア機能阻害が誘起するガラクトース培地特異的な生育阻害効果2014

    • Author(s)
      岩見亮, 大山良文, 高井直樹, 古久保哲朗
    • Organizer
      日本分子生物学会第37回年会
    • Place of Presentation
      横浜(パシフィコ横浜)
    • Year and Date
      2014-11-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] ハイスループット型レポーターシステムを用いた出芽酵母由来の新規コアプロモーターエレメントの同定及びその機能解析2014

    • Author(s)
      渡邉清, 矢部誠, 古久保哲朗
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜(横浜産貿ホール )
    • Year and Date
      2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 出芽酵母におけるTFIIDを介したGAL遺伝子群の脱抑制機構

    • Author(s)
      矢部 誠,大山 良文,高井 直樹,古久保 哲朗
    • Organizer
      日本分子生物学会第36回年会
    • Place of Presentation
      神戸(ポートピアホテル)
    • Related Report
      2013 Research-status Report
  • [Presentation] リボソーム構成因子の発現調節に関わる酵母Hmo1タンパク質のDNA 結合機構

    • Author(s)
      東野 綺子,雲財 悟,中山 理紗,土屋 奈穂,吉川 博文,古久保 哲朗,笠原 浩司
    • Organizer
      日本分子生物学会第36回年会
    • Place of Presentation
      神戸(ポートピアホテル)
    • Related Report
      2013 Research-status Report
  • [Presentation] 母性mRNAの3’非翻訳領域を標的としたアンチセンスモルフォリノオリゴによるpoly(A)鎖短小化機構の解析

    • Author(s)
      茂呂華奈子
    • Organizer
      日本分子生物学会第35回年会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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