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Elucidation of molecular mechanisms controlling localization and metabolism of mRNAs via retrotransposon insertions

Research Project

Project/Area Number 24657123
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

NAKAGAWA Shinichi  独立行政法人理化学研究所, 中川RNA生物学研究室, 准主任研究員 (50324679)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsノンコーディングRNA / レトロトランスポゾン / 4.5SH / 核 / SINE B2 / NF110 / CRISPR-Cas9
Outline of Final Research Achievements

To elucidate functions of retrotransposon sequences inserted in the untranslated region of mRNAs, we performed a series of analyses on an abundant nuclear noncoding RNA called 4.5SH, which is highly homologous to retrotransposon SINE B1. 4.5SH formed double-stranded RNA duplex with mRNAs containing antisense insertions of SINE B1, which were retained in the nucleus. The nuclear-retained mRNAs with antisense SINE B1 insertions were released into cytoplasm upon knockdown of 4.5SH. The nuclear retention via 4.5SH was regulated by a double-stranded RNA binding protein called NF110. These results revealed a novel mechanism that controls sub-cellular localization of mRNAs through the intra-molecular formation of the double stranded RNA structures.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (10 results)

All 2015 2014 2013 2012 Other

All Journal Article (4 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 2 results) Book (1 results)

  • [Journal Article] Analysis of the subcellular distribution of RNA by fluorescence in situ hybridization.2015

    • Author(s)
      Nakagawa S.
    • Journal Title

      Methods Mol Biol.

      Volume: 1206 Pages: 107-122

    • DOI

      10.1007/978-1-4939-1369-5_10

    • ISBN
      9781493913688, 9781493913695
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] レトロトランスポゾン配列を介して形成される二本鎖 RNA による遺伝子発現制御2015

    • Author(s)
      石田賢太郎、中川真一
    • Journal Title

      細胞工学

      Volume: 34 Pages: 38-42

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Formation of nuclear bodies by the lncRNA Gomafu-associating proteins Celf3 and SF12014

    • Author(s)
      Ishizuka, A., Hasegawa, Y., Ishida, K., Yanaka, K. & Nakagawa, S
    • Journal Title

      Genes Cells

      Volume: 19 Issue: 9 Pages: 704-721

    • DOI

      10.1111/gtc.12169

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Nuclear lncRNAs as epigenetic regulators-beyond skepticism.2014

    • Author(s)
      Nakagawa, S., Kageyama, Y.
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1839 Issue: 3 Pages: 215-222

    • DOI

      10.1016/j.bbagrm.2013.10.009

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] A novel mechanism of batch gene regulation by nuclear noncoding RNA 4.5SH2014

    • Author(s)
      Shinichi Nakagawa
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Santa Fe USA
    • Related Report
      2013 Research-status Report
  • [Presentation] 4.5SH RNAによる核内繋留を介した遺伝子発現制御におけるdsRNA 結合タンパク質Ilf3 の役割2012

    • Author(s)
      石田賢太郎、中川真一
    • Organizer
      日本RNA学会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] 核内ノンコーディング RNA Gomafu は新規核内構造体であるCelf3/SF1体と相互作用する2012

    • Author(s)
      石塚明、長谷川優子、中川真一
    • Organizer
      日本分子生物学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] Functional analyses of abundant nuclear long noncoding RNAs

    • Author(s)
      中川 真一
    • Organizer
      Ribo Club 14th Annual Meeting
    • Place of Presentation
      Quebec Canada
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] レトロトランスポゾンSINE B1と相同配列を持つ核内ノンコーディングRNAによるグローバルな遺伝子発現制御

    • Author(s)
      中川 真一
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶応日吉キャンパス(東京)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Book] mRNA非翻訳領域のレトロトランスポゾン挿入配列による転写後遺伝子発現制御2013

    • Author(s)
      中川 真一
    • Publisher
      実験医学
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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