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Construction of a Saccharomyces cerevisiae strain with a high level of RNA

Research Project

Project/Area Number 24658081
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Applied microbiology
Research InstitutionOsaka University

Principal Investigator

HARASHIMA Satoshi  大阪大学, 工学(系)研究科(研究院), 教授 (70116086)

Co-Investigator(Kenkyū-buntansha) SUGIYAMA Minetaka  大阪大学, 大学院工学研究科, 准教授 (80379130)
SASANO Yu  大阪大学, 大学院工学研究科, 助教 (90640194)
Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords応用微生物学 / 酵母 / 染色体工学 / ゲノム工学 / リボソームRNA
Research Abstract

Breeding of yeast strains with higher RNA content is important because yeast RNA is a source of 5'-ribonucleotides used in food industries. To construct an S. cerevisiae strain with higher RNA content, we have employed a four-step breeding procedure. In the first step, an S. cerevisiae disruptant of the RRN5 or RRN10 gene, important components of rRNA transcription, was constructed. In the second step, suppressors were isolated that restored the slow growth of the
rrn10 disruptant. Since RRN5 is an essential gene, plasmid rescue method wasapplied in case of rrn5 disruptant. In the third step, wild-type RRN5 or RRN10 gene was introduced into each of the suppressors. In the final step, copy number of rDNA gene was increased from ca. 150 to 300 by genome engineering. By these strategies, we have successfully constructed S. cerevisiae strains producing 2-fold higher content of RNA compared with strains currently used in industry.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (48 results)

All 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 5 results) Presentation (35 results) (of which Invited: 3 results) Book (2 results) Remarks (2 results)

  • [Journal Article] 酵母ゲノム工学の最前線2013

    • Author(s)
      杉山峰崇、笹野佑、原島俊
    • Journal Title

      細胞工学

      Volume: Vol.32、No5 Pages: 592-599

    • Related Report
      2013 Final Research Report
  • [Journal Article] Increased transcription of RPL40A and RPL40B is important for the improvement of RNA production in Saccharomyces cerevisiae.2013

    • Author(s)
      Khatun, F., Kurata, K., Chuwattanakul, V., Sugiyama, M., Kaneko, Y., Harashima, S.
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 116(4) Issue: 4 Pages: 423-432

    • DOI

      10.1016/j.jbiosc.2013.04.006

    • NAID

      110009675454

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Increase in rRNA content in a Saccharomyces cerevisiae suppressor strain from rrn10 disruptant by rDNA cluster duplication.2013

    • Author(s)
      Khatun, F., Sasano, Y., Sugiyama, M., Kaneko, Y., Harashima, S.
    • Journal Title

      Appl. Microbiol. Biotechnol.

      Volume: 97(20) Issue: 20 Pages: 9011-9019

    • DOI

      10.1007/s00253-013-5065-9

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 最新のゲノム編集技術が拓く新たな微生物育種への道2013

    • Author(s)
      笹野佑
    • Journal Title

      生物工学会誌

      Volume: Vol.91 Pages: 719-719

    • Related Report
      2013 Final Research Report
  • [Journal Article] 酵母ゲノム工学の最前線2013

    • Author(s)
      杉山 峰崇、笹野 佑、原島 俊
    • Journal Title

      細胞工学

      Volume: 32 Pages: 592-599

    • Related Report
      2013 Annual Research Report
  • [Journal Article] 最新のゲノム編集技術が拓く新たな微生物育種への道2013

    • Author(s)
      笹野 佑
    • Journal Title

      生物工学会誌

      Volume: 91 Pages: 719-719

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Large-scale genome reorganization in Saccharomyces cerevisiae through combinatorial loss of mini-chromosomes2012

    • Author(s)
      Youji Ueda, Shigehito Ikushima, Minetaka Sugiyama, Ryo Matoba, Yoshinobu Kaneko, Kenichi Matsubara, Satoshi Harashima
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: VOL. 113 Issue: 6 Pages: 675-682

    • DOI

      10.1016/j.jbiosc.2012.01.013

    • NAID

      10031085641

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Creation of an ethanol-tolerant yeast strain by genome reconstruction based on chromosome splitting technology2012

    • Author(s)
      Park, AH., Sugiyama, M., Harashima, S., Kim, YH.
    • Journal Title

      J. Microbiol. Biotechnol.

      Volume: 22(2) Pages: 184-189

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Creation of an ethanol-tolerant yeast strain by genome reconstruction based on chromosome splitting technology.2012

    • Author(s)
      Park, AH., Sugiyama, M., Harashima, S., Kim, YH.
    • Journal Title

      J. Microbiol. Biotechnol.

      Volume: 22(2) Pages: 184-9

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 酵母におけるゲノム工学技術の開発とゲノム機能の解明・育種への応用2013

    • Author(s)
      原島俊
    • Organizer
      大阪大学大学院工学研究科核酸制御(陽進堂)共同研究講座設立記念シンポジウム
    • Place of Presentation
      大阪
    • Related Report
      2013 Final Research Report
  • [Presentation] Recent advances in breeding technologies for microorganisms–More than just a trend-2013

    • Author(s)
      Satoshi Harashima
    • Organizer
      JSPS-NRCT Young Scientist Seminar 2013 Osaka
    • Place of Presentation
      Osaka
    • Related Report
      2013 Final Research Report
  • [Presentation] Genome-wide construction of a series of segmental aneuploids for genome analysis and breeding in Saccharomyces cerevisiae2013

    • Author(s)
      Waranya Natesuntorn, Kotaro Iwami, Yuki Matsubara, Tetsuya Hayashi, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      JSPS-NRCT Young Scientist Seminar 2013 Osaka
    • Place of Presentation
      Osaka
    • Related Report
      2013 Final Research Report
  • [Presentation] Genome-wide mapping for unexplored essential regions harboring synthetic lethal interactions in Saccharomyces cerevisiae2013

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Deasty Imara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      JSPS-NRCT Young Scientist Seminar 2013 Osaka
    • Place of Presentation
      Osaka
    • Related Report
      2013 Final Research Report
  • [Presentation] Molecular breeding of Saccharomyces cerevisiae strain producing high level of RNA2013

    • Author(s)
      Yu Sasano, Fahmida Khatun, Shogo Usugi, Minetaka Sugiyama, Satoshi Harashima
    • Organizer
      26^<th> International Conference on Yeast Genetics and Molecular Biology
    • Place of Presentation
      Frankfurt, Germany
    • Related Report
      2013 Final Research Report
  • [Presentation] PCR-mediated chromosome duplication method generates a defined duplicated chromosome as a novel tool for breeding and genome analysis in Saccharomyces cerevisiae2013

    • Author(s)
      Waranya Natesuntorn, Kotaro Iwami, Yuki Matsubara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      26^<th> International Conference on Yeast Genetics and Molecular Biology
    • Place of Presentation
      Frankfurt, Germany
    • Related Report
      2013 Final Research Report
  • [Presentation] CRISPR/Cas-PCSシステムを利用した染色体複数部位同時分断技術の開発2013

    • Author(s)
      笹野佑、長澤宏器、杉山峰崇、原島俊
    • Organizer
      酵母遺伝学フォーラム第46回研究報告会
    • Place of Presentation
      仙台
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Novel landscape for genetic interactions in Saccharomyces cerevisiae2013

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Deasty Imara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      YEAST GENETICS AND MOLECULAR BIOLOGY NEWS JAPAN No.46
    • Place of Presentation
      仙台
    • Related Report
      2013 Final Research Report
  • [Presentation] Genome-wide construction of a series of segmental aneuploids in Saccharomyces cerevisiae2013

    • Author(s)
      Waranya Natesuntorn, Yuki Matsubara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      YEAST GENETICS AND MOLECULAR BIOLOGY NEWS JAPAN No.46
    • Place of Presentation
      仙台
    • Related Report
      2013 Final Research Report
  • [Presentation] Systematic segmental duplication of chromosomes for genome analysis and breeding in Saccharomyces cerevisiae2013

    • Author(s)
      Waranya Natesuntorn, Yuki Matsubara, Yu Sasano, Minetaka Sugiyama, Satoshi Harashim
    • Organizer
      日本生物工学会第65回大会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Systematic mapping of unexplored regions harboring synthetic lethal interactions in Saccharomyces cerevisiae genome2013

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Deasty Imara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      日本生物工学会第65回大会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 多様性創出ゲノム工学技術の開発と微生物育種への応用2013

    • Author(s)
      原島俊
    • Organizer
      2013年度JBA新資源生物変換研究会シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] Recent advances in breeding technologies for microorganisms More than just a trend-2013

    • Author(s)
      Satoshi Harashima
    • Organizer
      JSPS-NRCT Young Scientist Seminar 2013
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
  • [Presentation] Genome-wide construction of a series of segmental aneuploids for genome analysis and breeding in Saccharomyces cerevisiae.2013

    • Author(s)
      Waranya Natesuntorn, Kotaro Iwami, Yuki Matsubara, Tetsuya Hayashi, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      JSPS-NRCT Young Scientist Seminar 2013
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
  • [Presentation] Genome-wide mapping for unexplored essential regions harboring synthetic lethal interactions in Saccharomyces cerevisiae.2013

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Deasty Imara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      JSPS-NRCT Young Scientist Seminar 2013
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular breeding of Saccharomyces cerevisiae strain producing high level of RNA.2013

    • Author(s)
      Yu Sasano, Fahmida Khatun, Shogo Usugi, Minetaka Sugiyama, Satoshi Harashima
    • Organizer
      26th International Conference on Yeast Genetics and Molecular Biology
    • Place of Presentation
      Frankfurt, Germany
    • Related Report
      2013 Annual Research Report
  • [Presentation] PCR-mediated chromosome duplication method generates a defined duplicated chromosome as a novel tool for breeding and genome analysis in Saccharomyces cerevisiae.2013

    • Author(s)
      Waranya Natesuntorn, Kotaro Iwami, Yuki Matsubara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      26th International Conference on Yeast Genetics and Molecular Biology
    • Place of Presentation
      Frankfurt, Germany
    • Related Report
      2013 Annual Research Report
  • [Presentation] Novel landscape for genetic interactions in Saccharomyces cerevisiae.2013

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Deasty Imara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      YEAST GENETICS AND MOLECULAR BIOLOGY NEWS JAPAN No.46
    • Place of Presentation
      仙台
    • Related Report
      2013 Annual Research Report
  • [Presentation] Genome-wide construction of a series of segmental aneuploids in Saccharomyces cerevisiae.2013

    • Author(s)
      Waranya Natesuntorn, Yuki Matsubara, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      YEAST GENETICS AND MOLECULAR BIOLOGY NEWS JAPAN No.46
    • Place of Presentation
      仙台
    • Related Report
      2013 Annual Research Report
  • [Presentation] 酵母rrn10遺伝子破壊抑圧変異株におけるrDNA領域の重複によるRNA量の増加2013

    • Author(s)
      Khatun Fahmida、笹野 佑、杉山峰崇、原島 俊
    • Organizer
      日本生物工学会第65回大会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report
  • [Presentation] rDNA写活必須遺伝子RRN5の破壊抑圧変異株を利用したRNA高含有出芽酵母の分子育種2013

    • Author(s)
      宇杉祥吾、Khatun Fahmida、狩屋貴洋、笹野 佑、杉山峰崇、原島 俊
    • Organizer
      日本生物工学会第65回大会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report
  • [Presentation] 出芽酵母におけるゲノム網羅的な染色体部分重複と表現型解析2013

    • Author(s)
      杉山峰崇、Waranya Natesuntorn、松原裕樹、林 達也、原島 俊
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] Random Walks on Chromosomal Regions Reveal Hidden Lethal Relationships among Non-essential Genes in the Genome of Saccharomyces cerevisiae2013

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] Plenary Lecture Recent Advances on New Breeding Technologies in Microorganisms -More than Just a Trend-2012

    • Author(s)
      Satoshi Harashima
    • Organizer
      2012 International Symposium & Annual Meeting A New Era of Biotechnology and Bioeconomy
    • Place of Presentation
      Busan,Korea
    • Related Report
      2013 Final Research Report
  • [Presentation] Exploitation of PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae2012

    • Author(s)
      Waranya Natesuntorn, Yuki Matsubara, Tatsuya Hayashi, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      YEAST GENETICS AND MOLECULAR BIOLOGY NEWS JAPAN No.45
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] Exploitation of PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae2012

    • Author(s)
      Waranya Natesuntorn, Yuki Matsubara, Tatsuya Hayashi, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      日本生物工学会第64回大会
    • Place of Presentation
      神戸
    • Related Report
      2013 Final Research Report
  • [Presentation] 特別シンポジウムウィルス学におけるdual use「ゲノムの多様性創出工学と生命科学・生命工学におけるデュアルユース問題」2012

    • Author(s)
      原島俊
    • Organizer
      第60回日本ウィルス学会学術集会
    • Place of Presentation
      大阪
    • Related Report
      2013 Final Research Report
  • [Presentation] 特別講演「酵母の育種理論と育種技術の発展とともに35年」2012

    • Author(s)
      原島俊
    • Organizer
      第19回日本生物工学会九州支部福岡大会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] 酵母におけるゲノム工学技術の開発とゲノム機能の解明・育種への応用

    • Author(s)
      原島 俊
    • Organizer
      大阪大学大学院工学研究科 核酸制御(陽進堂)共同研究講座設立記念シンポジウム
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
  • [Presentation] 多様性創出ゲノム工学技術の開発と微生物育種への応用

    • Author(s)
      原島 俊
    • Organizer
      2013年度JBA新資源生物変換研究会シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Recent Advances on New Breeding Technologies in Microorganisms -More than Just a Trend-.

    • Author(s)
      Satoshi Harashima
    • Organizer
      International Symposium & Annual Meeting A New Era of Biotechnology and Bioeconomy
    • Place of Presentation
      Busan,Korea
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Exploitation of PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae.

    • Author(s)
      W. Natesuntorn, Y. Matsubara, T. Hayashi, M. Sugiyama, Y. Kaneko, S. Harashima
    • Organizer
      YEAST GENETICS AND MOLECULAR BIOLOGY NEWS JAPAN No.45
    • Place of Presentation
      京都大学宇治キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Exploitation of PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae

    • Author(s)
      W. Natesuntorn, Y. Matsubara, T. Hayashi, M. Sugiyama, Y. Kaneko, S. Harashima
    • Organizer
      日本生物工学会第64回大会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] ウィルス学におけるdual use「ゲノムの多様性創出工学と生命科学・生命工学におけるデュアルユース問題」

    • Author(s)
      原島 俊
    • Organizer
      第60回日本ウィルス学会学術集会特別シンポジウム
    • Place of Presentation
      グランキューブ大阪
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 酵母の育種理論と育種技術の発展とともに35年

    • Author(s)
      原島 俊
    • Organizer
      第19回日本生物工学会九州支部福岡大会特別講演
    • Place of Presentation
      別府大学
    • Related Report
      2012 Research-status Report
    • Invited
  • [Book] 微生物を活用した新世代の有用物質生産技術2012

    • Author(s)
      原島 俊・Yeon-Hee Kim・西沢正文
    • Publisher
      (株)シーエムシー出版
    • Related Report
      2012 Research-status Report
  • [Book] 合成生物工学の隆起―有用物質の新たな生産法構築をめざして―2012

    • Author(s)
      原島 俊・西沢正文
    • Publisher
      (株)シーエムシー出版
    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.bio.eng.osaka-u.ac.jp/mg/

    • Related Report
      2013 Final Research Report
  • [Remarks] 大阪大学・原島研究室

    • URL

      http://www.bio.eng.osaka-u.ac.jp/mg/

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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