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Novel strategy to awake gene cluster using small molecules that activate LAL family transcriptional regulator

Research Project

Project/Area Number 24658088
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Applied microbiology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

TAKAHASHI Shunji  独立行政法人理化学研究所, 環境資源科学研究センター, ユニットリーダー (30311608)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords休眠遺伝子覚醒 / バイオメディエーター / LALファミリー / 小分子化合物 / 転写制御因子
Research Abstract

Genome sequencing of Streptomyces spp. revealed many unknown secondary metabolite gene clusters that might be potential sources for a medicinal drug and an agricultural chemical. The objective of the study is an activation of secondary metabolite gene clusters using small molecules. LAL family transcriptional regulators are widely found in Streptomyces spp. Among them, we focused on RevU which exists in reveromycin biosynthetic gene cluster. We searched a small molecule which activates reveromycin production, and optimized its chemical structure. This study gave great insights for the mechanism of the activation of secondary metabolite gene cluster.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (62 results)

All 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (48 results) (of which Invited: 4 results) Book (2 results) Remarks (4 results)

  • [Journal Article] RK-1355A and B, novel quinomycin derivatives isolated from a microbial metabolites fraction library based on NPPlot screening.2014

    • Author(s)
      Lim CL, Nogawa T, Uramoto M, Okano A, Hongo Y, Nakamura T, Koshino H, Takahashi S, Ibrahim D, Osada H.
    • Journal Title

      J Antibiot (Tokyo)

      Volume: 67 Issue: 4 Pages: 323-329

    • DOI

      10.1038/ja.2013.144

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Creation of novel reveromycin derivatives by alcohol added fermentation2013

    • Author(s)
      Nogawa T. et al.
    • Journal Title

      J. Antibiot.

      Volume: 66 Issue: 4 Pages: 247-250

    • DOI

      10.1038/ja.2012.115

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A Point Mutation in <i>ftmD</i> Blocks the Fumitremorgin Biosynthetic Pathway in <i>Aspergillus fumigatus</i> Strain Af2932013

    • Author(s)
      Kato N, Suzuki H, Okumura H, Takahashi S, Osada H
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 77 Issue: 5 Pages: 1061-1067

    • DOI

      10.1271/bbb.130026

    • NAID

      10031177597

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pyrrolizilactone, a new pyrrolizidinone metabolite produced by a fungus.2013

    • Author(s)
      Nogawa T, Kawatani M, Uramoto M, Okano A, Aono H, Futamura Y, Koshino H, Takahashi S, Osada H.
    • Journal Title

      J Antibiot (Tokyo)

      Volume: 66 Issue: 10 Pages: 621-623

    • DOI

      10.1038/ja.2013.55

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] リベロマイシンA生合成に関わる未知酵素の解明-スピロアセタール環化酵素の発見2013

    • Author(s)
      高橋俊二、長田裕之
    • Journal Title

      化学と生物

      Volume: Vol.51,No.3 Pages: 138-140

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] リベロマイシンA生合成に関わる未知酵素の解明-スピロアセタール環化酵素の発見2013

    • Author(s)
      高橋俊二、長田裕之
    • Journal Title

      化学と生物

      Volume: 51 Pages: 138-140

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spirotoamides A and B, novel 6,6-spiroacetal polyketides isolated from a microbial metabolite fraction library2012

    • Author(s)
      Nogawa T
    • Journal Title

      J.Antibiot.

      Volume: (In press) Issue: 3 Pages: 123-128

    • DOI

      10.1038/ja.2011.121

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Construction of a microbial natural product library for chemical biology studies2012

    • Author(s)
      Kato N.
    • Journal Title

      Curr. Opin. Chem. Biol.

      Volume: 16 Issue: 1-2 Pages: 101-108

    • DOI

      10.1016/j.cbpa.2012.02.016

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Reveromycin A生合成におけるサクシニル化酵素の機能解析2014

    • Author(s)
      前島希
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Butylmalonyl-CoA生合成に関与するRevRの機能解析2014

    • Author(s)
      宮澤岳
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Verticilactam遺伝子クラスターに存在する生合成遺伝子群の機能解析2014

    • Author(s)
      寺井淳高
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Analysis of RevU interaction to carboline compounds2014

    • Author(s)
      Panthee S.
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Elucidation of reveromycin A biosynthesis2014

    • Author(s)
      Takahashi S.
    • Organizer
      1^<st> US-Japan Seminar on the Biosynthesis of Natural Products For Young Researcher
    • Place of Presentation
      O-okayama, Tokyo
    • Related Report
      2013 Final Research Report
  • [Presentation] In vitro reconstruction of reveromycin A biosythesis2014

    • Author(s)
      Takahashi S.
    • Organizer
      The 7^<th> Japan-Korea Chemical Biology Symposium
    • Place of Presentation
      Jeju Island, Koera
    • Related Report
      2013 Final Research Report
  • [Presentation] lucidation of reveromycin A biosynthesis2014

    • Author(s)
      Shunji Takahashi et al.
    • Organizer
      1st US-Japan Seminar on the Biosynthesis of Natural Products For Young Researcher
    • Place of Presentation
      大岡山、東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Butylmalonyl-CoA生合成に関与するRevRの機能解析2014

    • Author(s)
      宮澤岳 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学、神奈川
    • Related Report
      2013 Annual Research Report
  • [Presentation] Verticilactam遺伝子クラスターに存在する生合成遺伝子群の機能解析2014

    • Author(s)
      寺井淳高 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学、神奈川
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of RevU interaction to carboline compounds2014

    • Author(s)
      Suresh Panthee et al.
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学、神奈川
    • Related Report
      2013 Annual Research Report
  • [Presentation] 糸状菌Fusarium sp. FN080326株由来フサリセチンA生合成遺伝子クラスターの解析2014

    • Author(s)
      加藤直樹 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学、神奈川
    • Related Report
      2013 Annual Research Report
  • [Presentation] Reveromycin A生合成におけるサクシニル化酵素の機能解析2014

    • Author(s)
      前島 希 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学、神奈川
    • Related Report
      2013 Annual Research Report
  • [Presentation] In vitro reconstruction of reveromycin A biosythesis2014

    • Author(s)
      Shunji Takahashi
    • Organizer
      The 7thJapan-Korea Chemical Biology Symposium
    • Place of Presentation
      Jeju Island, Koera.
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Isolation of Novel Bioactive Compounds from Fraction Library of Microorganisms Based On NPPlot Screening2013

    • Author(s)
      Lim C.L.
    • Organizer
      第55回天然有機化合物討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] S. reveromyceticusを活用したsamR0483遺伝子の機能解析2013

    • Author(s)
      宮澤岳
    • Organizer
      放線菌学会
    • Place of Presentation
      メルパルク広島
    • Related Report
      2013 Final Research Report
  • [Presentation] 異種発現によるVerticilactam生合成遺伝子の同定2013

    • Author(s)
      寺井淳高
    • Organizer
      放線菌学会
    • Place of Presentation
      メルパルク広島
    • Related Report
      2013 Final Research Report
  • [Presentation] Transcriptomic analysis of biomediator treated Streptomyces reveromyceticus2013

    • Author(s)
      Panthee S.
    • Organizer
      放線菌学会
    • Place of Presentation
      メルパルク広島
    • Related Report
      2013 Final Research Report
  • [Presentation] Elucidation of 2-alkylmalonyl-CoA biosynthesis in Reveromycin production2013

    • Author(s)
      Miyazawa T.
    • Organizer
      KRIBB-RIKEN Chemical Biology Joint Symposium
    • Place of Presentation
      Ochang, Korea
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Analysis of Reveromycin A biosynthetic machinery2013

    • Author(s)
      Takahashi S.
    • Organizer
      RIKEN-Max Planck Joint Research Center for Systems Chemical Biology The 2nd Symposium
    • Place of Presentation
      Wako Saitama
    • Related Report
      2013 Final Research Report
  • [Presentation] [3,3-D_2]heptanoic acidを用いたリベロマイシンD生合成経路の解析2013

    • Author(s)
      宮澤岳
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学
    • Related Report
      2013 Final Research Report
  • [Presentation] リベロマイシン生合成におけるサクシニル化機構の解析2013

    • Author(s)
      高橋俊二
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Secondary metabolite production in Streptomyces can be induced byβ-carboline compounds2013

    • Author(s)
      Panthee S.
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学
    • Related Report
      2013 Final Research Report
  • [Presentation] S. reveromyceticusを活用したsamR0483遺伝子の機能解析2013

    • Author(s)
      宮澤 岳 他
    • Organizer
      放線菌学会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report
  • [Presentation] 異種発現によるVerticilactam生合成遺伝子の同定2013

    • Author(s)
      寺井淳高 他
    • Organizer
      放線菌学会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report
  • [Presentation] Transcriptomic analysis of biomediator treated Streptomyces reveromyceticus2013

    • Author(s)
      Suresh Panthee et al.
    • Organizer
      放線菌学会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report
  • [Presentation] Streptomyces属由来の新規III型ポリケタイド合成酵素の機能解析2013

    • Author(s)
      相澤 光輝 他
    • Organizer
      放線菌学会
    • Place of Presentation
      広島
    • Related Report
      2013 Annual Research Report
  • [Presentation] Isolation of Novel Bioactive Compounds from Fraction Library of Microorganisms Based On NPPlot Screening2013

    • Author(s)
      Lim Chung Liang et al.
    • Organizer
      天然有機化合物討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] Fusarium sp. FN080326株由来フサリセチンA生合成遺伝子クラスターの同定2013

    • Author(s)
      加藤直樹 他
    • Organizer
      糸状菌分子生物学研究会
    • Place of Presentation
      筑波国際会議場、茨城
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of Reveromycin A biosynthetic machinery2013

    • Author(s)
      Shunji Takahashi et al.
    • Organizer
      RIKEN-Max Planck Joint Research Center for Systems Chemical Biology The 2nd Symposium
    • Place of Presentation
      和光、埼玉
    • Related Report
      2013 Annual Research Report
  • [Presentation] リベロマイシン生合成研究から遺伝子クラスター覚醒小分子探索まで2013

    • Author(s)
      高橋 俊二
    • Organizer
      JBA発酵と代謝研究会シンポジウム
    • Place of Presentation
      東京大学、東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Secondary metabolite production in Streptomyces can be induced by &#61538;-carboline compounds2013

    • Author(s)
      Suresh Panthee
    • Organizer
      日本農芸化学会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Research-status Report
  • [Presentation] リベロマイシン生合成におけるサクシニル化機構の解析2013

    • Author(s)
      高橋 俊二
    • Organizer
      日本農芸化学会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 病原性糸状菌Aspergillus fumigatusの第8染色体上の二次代謝遺伝子クラスターに含まれる転写活性化因子の役割2013

    • Author(s)
      加藤 直樹
    • Organizer
      日本農芸化学会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Research-status Report
  • [Presentation] [3,3-D2]heptanoic acid を用いたリベロマイシンD生合成経路の解析2013

    • Author(s)
      宮澤 岳
    • Organizer
      日本農芸化学会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Structure and Function of P450revI in Reveromycin A Biosynthesis2012

    • Author(s)
      Takahashi S.
    • Organizer
      チトクロムP450発見50周年記念シンポジウム
    • Place of Presentation
      九州大学
    • Related Report
      2013 Final Research Report
  • [Presentation] 新規リベロマイシン誘導体の創製と活性評価2012

    • Author(s)
      野川俊彦
    • Organizer
      第54回天然有機化合物討論会
    • Place of Presentation
      東京農業大学
    • Related Report
      2013 Final Research Report
  • [Presentation] リベロマイシン生合成における3級水酸基のサクシニル化2012

    • Author(s)
      高橋俊二
    • Organizer
      放線菌学会
    • Place of Presentation
      府中の森芸術劇場
    • Related Report
      2013 Final Research Report
  • [Presentation] 2-アルキルマロニル-CoA生合成経路の解析2012

    • Author(s)
      宮澤岳
    • Organizer
      放線菌学会
    • Place of Presentation
      府中の森芸術劇場
    • Related Report
      2013 Final Research Report
  • [Presentation] Identification of small molecules inducing reveromycin production2012

    • Author(s)
      Panthee S.
    • Organizer
      放線菌学会
    • Place of Presentation
      府中の森芸術劇場
    • Related Report
      2013 Final Research Report
  • [Presentation] Novel compound which up-regulates secondary metabolite gene cluster2012

    • Author(s)
      Takahashi S.
    • Organizer
      The International Conference of Natural Product Biosynthesis
    • Place of Presentation
      Awaji Yumebutai
    • Related Report
      2013 Final Research Report
  • [Presentation] Deciphering of reveromycin A biosynthesis2012

    • Author(s)
      Takahashi S.
    • Organizer
      RIKEN-MAXPLANCK JOINT RESEARCH CENTER Kick Off Symposium
    • Place of Presentation
      Dortmund, Germany
    • Related Report
      2013 Final Research Report
  • [Presentation] Novel compound which up-regulates secondary metabolite gene cluster2012

    • Author(s)
      高橋 俊二
    • Organizer
      The International Conference of Natural Product Biosynthesis
    • Place of Presentation
      Awaji Yumebutai, Hyogo
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Identification of small molecules inducing reveromycin production.2012

    • Author(s)
      Suresh Panthee
    • Organizer
      第27回 放線菌学会
    • Place of Presentation
      東京・府中の森芸術劇場
    • Related Report
      2012 Research-status Report
  • [Presentation] 新規リベロマイシン誘導体の創製と活性評価2012

    • Author(s)
      野川 俊彦
    • Organizer
      第54回天然有機化合物討論会
    • Place of Presentation
      東京・東京農業大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Structure and Function of P450revI in Reveromycin A Biosynthesis2012

    • Author(s)
      高橋 俊二
    • Organizer
      チトクロムP450発見50周年記念シンポジウム
    • Place of Presentation
      福岡・九州大学医学部
    • Related Report
      2012 Research-status Report
  • [Presentation] リベロマイシン生合成における3級水酸基のサクシニル化2012

    • Author(s)
      高橋 俊二
    • Organizer
      第27回 放線菌学会
    • Place of Presentation
      東京・府中の森芸術劇場
    • Related Report
      2012 Research-status Report
  • [Presentation] 2-アルキルマロニル-CoA生合成経路の解析2012

    • Author(s)
      宮澤 岳
    • Organizer
      第27回 放線菌学会
    • Place of Presentation
      東京・府中の森芸術劇場
    • Related Report
      2012 Research-status Report
  • [Presentation] 第3回生合成マシナリー札幌セミナー

    • Author(s)
      高橋 俊二
    • Organizer
      放線菌二次代謝産物の生合成
    • Place of Presentation
      札幌・北海道大学
    • Related Report
      2012 Research-status Report
    • Invited
  • [Book] リベロマイシンA生合成にかかわる未知酵素の解明 スピロアセタール環化酵素の発見2013

    • Author(s)
      高橋 俊二
    • Total Pages
      3
    • Publisher
      農芸化学会誌
    • Related Report
      2012 Research-status Report
  • [Book] 微生物の英知を生かす2012

    • Author(s)
      高橋 俊二
    • Total Pages
      1
    • Publisher
      生物工学会誌
    • Related Report
      2012 Research-status Report
  • [Remarks] 天然物生合成研究ユニット

    • URL

      http://www.csrs.riken.jp/jp/labs/npbu/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.csrs.riken.jp/en/labs/npbu/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 天然物生合成研究ユニット

    • URL

      http://www.csrs.riken.jp/jp/labs/npbu/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 天然物生合成研究ユニット

    • URL

      http://www.csrs.riken.jp/jp/labs/npbu/index.html

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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