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Construction of novel molecular mechanism on polysaccharide-forming enzyme and its application

Research Project

Project/Area Number 24658089
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionHokkaido University

Principal Investigator

KIMURA Atsuo  北海道大学, (連合)農学研究科(研究院), 教授 (90186312)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords多糖 / ドメイン / 合成
Research Abstract

Purpose of this research is the elucidation of structural elements of polysaccharide-producing enzyme and middle-size-oligosaccharide-producing enzyme. Furthermore, the formation of new oligosaccharide is also purpose of this study by controlling the structural element. The obtained results were as follows; (1) Polysaccharide-producing enzyme: Catalytic amino acids were two Glu. Polysaccharide-forming structural element was in the C-terminal region of enzyme. (2) Middle-size-oligosaccharide-producing enzyme: Three-dimensional structure was elucidated, and catalytic residues were Asp and Glu. Mutation analyses of two aromatic residues at sites distant from catalytic center revealed that one residue improved the enzyme function.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (37 results)

All 2014 2013 2012 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (18 results) (of which Invited: 6 results) Book (1 results) Remarks (3 results)

  • [Journal Article] Structural elucidation of cyclization mechanism ofα-1,6-glucan by Bacillus circulans T3040 cycloisomaltooligo- saccharide glucanotransferase2014

    • Author(s)
      Nobuhiro Suzuki, Zui Fujimoto, Young-Min Kim, Mitsuru Momma, Naomi Kishine, Ryuichiro Suzuki, Shiho Suzuki, Shinsichi Kitamura, Mikihiko Kobayashi, Atsuo Kimura, Kazumi Funane
    • Journal Title

      J Biol Chem

      Volume: 288(26): in press Issue: 17 Pages: 12040-12051

    • DOI

      10.1074/jbc.m114.547992

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evidence for cycloisomaltooligosac- charide production from starch by Bacillus circulans T-30402014

    • Author(s)
      Kazumi Funane, Hitomi Ichinose, Motomi Araki, Ryuichiro Suzuki, Keitarou Kimura, Zui Fujimoto, Mikihiko Kobayashi, Atsuo Kimura
    • Journal Title

      Appl Microbiol Biotechnol

      Volume: 98(9) Issue: 9 Pages: 3947-3954

    • DOI

      10.1007/s00253-014-5515-z

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 糖質酵素の分子機構に関する研究2014

    • Author(s)
      木村淳夫
    • Journal Title

      応用糖質科学

      Volume: 4(1) Pages: 3-16

    • URL

      http://jsag.jp/index_j.html

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 糖質酵素の分子機構に関する研究.2014

    • Author(s)
      木村淳夫
    • Journal Title

      応用糖質科学

      Volume: 4 Pages: 3-16

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Repalcement of the catalytic nucleophle aspartyl residue of dextran glucosidase by cysteine sulfinate enhances transglucosylation ratio.2013

    • Author(s)
      Saburi W, Kobayashi M, Mori H, Okuyama M, Kimura A
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 288 Issue: 44 Pages: 31670-7

    • DOI

      10.1074/jbc.m113.491449

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analyses of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040.2013

    • Author(s)
      Suzuki N, Kim YM, Momma M, Fujimoto Z, Kobayashi M, Kimura A, Funane K
    • Journal Title

      Acta Crystallogr F

      Volume: 69 Issue: 8 Pages: 946-949

    • DOI

      10.1107/s174430911301991x

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular basis for the recognition of long-chain substrates by plant α-glucosidase.2013

    • Author(s)
      Tagami T, Yamashita K, Okuyama M, Mori H, Yao M, Kimura A
    • Journal Title

      J Biol Chem

      Volume: 288 Issue: 26 Pages: 19296-19303

    • DOI

      10.1074/jbc.m113.465211

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel mechanism for promotion of quercetin glycoside absorption by megalo α-1,6-glucosaccharide in the rat small intestine2013

    • Author(s)
      Shinoki A, Lang W, Thawornkuno C, Kang HK, Kumagai Y, Okuyama M, Mori H, Kimura A, Ishizuka S, Hara H
    • Journal Title

      Food Chem

      Volume: 136(2) Issue: 2 Pages: 293-296

    • DOI

      10.1016/j.foodchem.2012.08.028

    • NAID

      120005228255

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Key aromatic residue, possibly presenting at subsite +2 and +3, of glycoside hydrolase family 31 α-glucosidase regulates recognition on long-chain substrates.2013

    • Author(s)
      Tagami T, Okuyama M, Nakai H, Kim YM, Mori H, Taguchi K, Svensson B, Kimura A
    • Journal Title

      Biochim Biophys Acta

      Volume: 1834 Issue: 1 Pages: 329-335

    • DOI

      10.1016/j.bbapap.2012.08.007

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Amino Acids in Conserved Region II Are Crucial to Substrate Specificity, Reaction Velocity, and Regioselectivity in the Transglucosylation of Honeybee GH-13 α-Glucosidases2012

    • Author(s)
      Tagami T, Tanaka Y, Okuyama M, Mori H, Kimura A
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 76 Issue: 10 Pages: 1967-1974

    • DOI

      10.1271/bbb.120473

    • NAID

      130004054024

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Bacteroides thetaiotaomicron VPI- 5482 glycoside hydrolase family 66 homolog catalyzes dextranolytic and cyclization reactions2012

    • Author(s)
      Kim YM, Eiji Y, Kang MS, Nakai H, Saburi W, Okuyama M, Mori H, Funane K, Kim D, Kimura A
    • Journal Title

      FEBS J

      Volume: 279(17) Issue: 17 Pages: 3185-3191

    • DOI

      10.1111/j.1742-4658.2012.08698.x

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Degree of polymerization in dietaryα-1,6-glucosaccharides modulates symptom of experimental colitis in rats2012

    • Author(s)
      Hitoshi Iwaya, Jae-Sung Lee, Shinya Yamagishi, Aki Shinoki, Weeranuch Lang, Hee- Kwon Kang, Masayuki Okuyama, Haruhide Mori, Hiroshi Hara, Atsuo Kimura, Satoshi Ishizuka
    • Journal Title

      Plos One

      Volume: 7(11) Issue: 11 Pages: e50658-e50658

    • DOI

      10.1371/journal.pone.0050658

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical characterization of a cycloisomaltooligosaccharide glucanotransferase from Paenibacillus sp. 598K2012

    • Author(s)
      Suzuki R, Terasawa K, Kimura K, Fujimoto Z, Momma M, Kobayashi M, Kimura A, Funane K
    • Journal Title

      Biochim Biophys Acta

      Volume: 1824(7) Issue: 7 Pages: 919-924

    • DOI

      10.1016/j.bbapap.2012.04.001

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel dextranase catalyzing cycloisomaltooligosaccharide-formation and its identification of catalytic amino acids and their functions using chemical rescue approach.2012

    • Author(s)
      Kim YM
    • Journal Title

      J Biol Chem

      Volume: 287 Issue: 24 Pages: 19927-19935

    • DOI

      10.1074/jbc.m111.339036

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural elucidation of dextran degradation mechanism by Streptococcus mutans dextranase belonging to glycoside hydrolase family 662012

    • Author(s)
      Suzuki N, Kim YM, Fujimoto Z, Momma M, Okuyama M, Mori H, Funane K, Kimura A
    • Journal Title

      J Biol Chem

      Volume: 287(24) Issue: 24 Pages: 19916-19926

    • DOI

      10.1074/jbc.m112.342444

    • NAID

      120005183151

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Molecular mechanism of novel enzymes forming megalosaccharides2014

    • Author(s)
      Yuya Kumagai, Juri Sadahiro, Weeranuch Lang, Young-Min Kim, Michiyo Kanegae, Masayuki Okuyama, Haruhide Mori, Kazumi Funane, Zui Fujimoto, Satoshi Ishizuka, Hiroshi Hara, Doman Kim, Atsuo Kimura
    • Organizer
      Korean Society for Microbiology and Biotechnology
    • Place of Presentation
      BEXCO(Busan、韓国)
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Gluco- nobacter oxydans由来dextran dextrinaseの直鎖イソマルトメガロ糖の効率的な合成に関わる領域の解析2014

    • Author(s)
      熊谷祐也, Lang Weeranuch,貞慶樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学(川崎市多摩区)
    • Related Report
      2013 Final Research Report
  • [Presentation] 糖質酵素の分子機構に関する研究:新規な糖質機能の発見と応用2014

    • Author(s)
      木村淳夫
    • Organizer
      平成25年度日本応用糖質科学会北海道支部シンポジウム(招待講演)
    • Place of Presentation
      北農ビル(札幌市中央区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Gluconobacter oxydans由来dextran dextrinaseの直鎖イソマルトメガロ糖の効率的な合成に関わる領域の解析2014

    • Author(s)
      熊谷祐也, Lang Weeranuch, 貞廣樹里, 奥山正幸, 森春英, 木村淳夫
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学(川崎市多摩区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 糖質酵素の分子機構に関する研究.新規な糖質機能の発見と応用2013

    • Author(s)
      木村淳夫
    • Organizer
      平成25年度日本応用糖質科学会北海道支部シンポジウム
    • Place of Presentation
      北農ビル(札幌市中央区)
    • Year and Date
      2013-02-03
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Glucono- bacter oxydans由来dextran dextrinaseの直鎖イソマルトメガロ糖の合成に関わる領域2013

    • Author(s)
      熊谷祐也, Weeranuch Lang,貞慶樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Related Report
      2013 Final Research Report
  • [Presentation] Gluconobacter oxydansが産生する2つのデキストラン合成酵素の同一性に関する解析2013

    • Author(s)
      貞慶樹里,森春英,佐分利1=,奥山正幸,木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Related Report
      2013 Final Research Report
  • [Presentation] 糖質酵素の分子機構に関する研究2013

    • Author(s)
      木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 糖質酵素の分子機構に関する研究2013

    • Author(s)
      木村淳夫
    • Organizer
      応用糖質科学会平成25年度大会
    • Place of Presentation
      鹿児島大学農学部(鹿児島市)
    • Related Report
      2013 Final Research Report
  • [Presentation] Gluco- nobacter oxydans由来dextran dextrinaseによる直鎖イソマルトメガロ糖の酵素合成2013

    • Author(s)
      熊谷祐也,Weeranuch Lang,貞慶樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      応用糖質科学会平成25年度大会
    • Place of Presentation
      鹿児島大学農学部(鹿児島市)
    • Related Report
      2013 Final Research Report
  • [Presentation] Gluconobacter oxydans由来dextran dextrinaseによる直鎖イソマルトメガロ糖の酵素合成2013

    • Author(s)
      熊谷祐也,Weeranuch Lang,貞廣樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      応用糖質科学会平成25年度大会(ポスター賞受賞)
    • Place of Presentation
      鹿児島大学農学部(鹿児島市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 糖質酵素の分子機構に関する研究2013

    • Author(s)
      木村淳夫
    • Organizer
      応用糖質科学会平成25年度大会(学会賞受賞・招待講演)
    • Place of Presentation
      城山観光ホテル(鹿児島市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 糖質酵素の分子機構に関する研究2013

    • Author(s)
      木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会(招待講演)
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Gluconobacter oxydansが産生する2つのデキストラン合成酵素の同一性に関する解析2013

    • Author(s)
      貞廣樹里,森春英,佐分利亘,奥山正幸,木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Gluconobacter oxydans由来dextran dextrinaseの直鎖イソマルトメガロ糖の合成に関わる領域2013

    • Author(s)
      熊谷祐也, Weeranuch Lang, 貞廣樹里, 奥山正幸, 森春英, 木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] デキストラン合成酵素dextran dextrinaseの触媒残基およびその機能の決定2013

    • Author(s)
      貞廣 樹里
    • Organizer
      日本農芸化学会年次大会
    • Place of Presentation
      東北大学(仙台)
    • Related Report
      2012 Research-status Report
  • [Presentation] Structural insights into specificity for long-chain substrates of sugar beet α-glucosidase.2012

    • Author(s)
      Tagami T
    • Organizer
      Plant and Seaweed Polysaccharides Workshop
    • Place of Presentation
      Nantes Event Center (Nantes, France)
    • Related Report
      2012 Research-status Report
  • [Presentation] Domain organization and catalytic amino acids of dextran dextranase: structural similarity to inverting glucoamylase in catalytic domain2012

    • Author(s)
      Sadahiro J
    • Organizer
      26th Internal Carbohydrate Symposium
    • Place of Presentation
      Madrid City Centre (Madrid, Spain)
    • Related Report
      2012 Research-status Report
  • [Book] Molecular mechanism of carbohydrate-active enzymes and their application2012

    • Author(s)
      Atsuo Kimura
    • Publisher
      Kaiseisha Press
    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.agr.hokudai.ac.jp/rfoa/abs/abs2-3.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 奥山正幸、木村淳夫:平成24年度サイエンス・ートナーシップ・プロジェクト(SPP)事業(北海道札幌藻岩高校) アウトリーチ活動情報

    • Related Report
      2013 Final Research Report
  • [Remarks] 奥山正幸、木村淳夫:平成25年度サイエンス・ートナーシップ・プロジェクト(SPP)事業(北海道札幌藻岩高校) アウトリーチ活動情報

    • Related Report
      2013 Final Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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