• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Systematic analysis of transcription factors in Marchantia polymorpha

Research Project

Project/Area Number 24658095
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionKyoto University

Principal Investigator

KOHCHI Takayuki  京都大学, 生命科学研究科, 教授 (40202056)

Co-Investigator(Renkei-kenkyūsha) ISHIZAKI Kimitsune  京都大学神戸大学, 生命科学研究科理学研究科, 助教(24 年度)准教授(25 年度) (00452293)
NISHIHAMA Ryuichi  京都大学, 生命科学研究科, 講師 (70283455)
Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords転写因子 / ゼニゴケ / 陸上植物進化 / 植物発生 / 転写制御因子 / 苔類ゼニゴケ / 転写制御
Research Abstract

Transcription factors are major regulators for various biological processes including development and environmental responses. Arabidopsis thaliana and Physcomitrella patens have 2,000 and 1,200 transcription factors, respectively. The liverwort Marchantia polymorpha is an emerging model organism for developmental and evolutional studies. M. polymorpha occupies a crucial position in the evolution of land plant and has the haploid-dominant life cycle, which provides advantages over diploid plants for molecular genetic analysis. In this study, we identified ca. 300 transcription factors in M. polymorpha by searching our EST and RNA-sequence databases that include more than 20,000 genes. Surprisingly, M. polymorpha had 38 transcription factor families that are common numbers with A. thaliana. These results indicate that redundancy of transcription factors in M. polymorpha should be very low and that M. polymoroha provides suitable system for genetic analysis.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (26 results)

All 2014 2013 2012 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results,  Open Access: 2 results) Presentation (11 results) (of which Invited: 3 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Comparison of the MpEF1α and CaMV35 promoters for application in Marchantia polymorpha overexpression studies2014

    • Author(s)
      Althoff, F., Kopischke, S., Zobell, O., Ide, K., Ishizaki, K., Kohchi, T. and Zachgo, S.
    • Journal Title

      Transgenic Research

      Volume: 23 Issue: 2 Pages: 235-244

    • DOI

      10.1007/s11248-013-9746-z

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] COSTIMBOUS VASCPLAR RISG (COVI) is a trans-Golgi Network-Looulizde Membruoe Protein Pequirde for Golgi Morphology and Varuolur Protein Sorling2014

    • Author(s)
      Makoto Shirakawa, Haruko Heda. Yasuko Koumoto. Kentaro Fuji. Chiaki Nishiyama. Takayuki Kahchi, Ikuko Hara-Nishimura and Tomoo Shimado
    • Journal Title

      Plant and Cell Physiology

      Volume: 55 Issue: 4 Pages: 764-772

    • DOI

      10.1093/pcp/pct195

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] CRISPR/Cas9 Mediated Targeted Mutagenesis in the Liverwort Marchantia polymorpha L.2014

    • Author(s)
      Shigeo S. Sugano, Makoto Shirakawa, Junpei Takagi, Yoriko Matsuda, Tomoo Shimada, Ikuko Hara-Nishimura, Takayuki Kohchi
    • Journal Title

      Plant Cell Physiology

      Volume: 55(3) Issue: 3 Pages: 475-81

    • DOI

      10.1093/pcp/pcu014

    • Related Report
      2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Co-option of a photoperiodic growth-phase transition system during land plant evolution.2014

    • Author(s)
      Akane Kubota, Shogo Kita, Kimitsune Ishizaki, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi
    • Journal Title

      Nature Communications

      Volume: 5 : 3668 Issue: 1 Pages: 3668-3668

    • DOI

      10.1038/ncomms4668

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Efficient <i>Agrobacterium</i>-Mediated Transformation of the Liverwort <i>Marchantia polymorpha</i> Using Regenerating Thalli2013

    • Author(s)
      Kubota, A., Ishizaki, K., Hosaka, M., Kohchi T.
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 77 Issue: 1 Pages: 167-172

    • DOI

      10.1271/bbb.120700

    • NAID

      10031164707

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cold-induced organelle relocation in the liverwort Marchantia polymorpha L.2013

    • Author(s)
      Ogasawara Y, Ishizaki K, Kohchi T & Kodama Y
    • Journal Title

      Plant, Cell & Environment

      Volume: 印刷中 Issue: 8 Pages: 1-9

    • DOI

      10.1111/pce.12085

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Homologous recombination-mediated gene targeting in the liverwort Marchantia polymorpha L.2013

    • Author(s)
      K. Ishizaki
    • Journal Title

      Scientific Reports

      Volume: 3 Issue: 1 Pages: 1532-1532

    • DOI

      10.1038/srep01532

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of four nuclear-encoded plastid RNA polymerase sigma factor genes in the liverwort Marchantia polymorpha: blue-light- and multiple stress-responsive SIG5 was acquired early in the emergence of terrestrial plants.2013

    • Author(s)
      Kanazawa T, Ishizaki K, Kohchi T, Hanaoka M, Tanaka K.
    • Journal Title

      Plant Cell Physiol.

      Volume: 54 Issue: 10 Pages: 1736-1748

    • DOI

      10.1093/pcp/pct119

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Essential role of the E3 ubiquitin ligase NOPPERABO1 for schizogerlous intercellular space formation in the liverwort Merchntia polrmorpha.2013

    • Author(s)
      Kimitsune Ishizakia, Miya Mizutania(第一共著者), Masaki Shimamura, Akihide Masuda, Ryuichi Nishihamaa and Takayuki Kohchi
    • Journal Title

      Plant Cell

      Volume: 25 Issue: 10 Pages: 4075-4084

    • DOI

      10.1105/tpc.113.117051

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Subfunctionalization of sigma factors during the evolution of land plants based on mutant analysis of liverwort (Marchantia polymorpha L.) MpSIG1.2013

    • Author(s)
      Ueda, M., Takami, T., Peng, L., Ishizaki, K., Kohchi, T., Shikanai, T. and Nishimura, Y.
    • Journal Title

      Genome Biology and Evolution

      Volume: 5 Issue: 10 Pages: 1836-1848

    • DOI

      10.1093/gbe/evt137

    • NAID

      120005373074

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of auxin-mediated transcriptional activation using a common auxin-responsive reporter system in the liverwort Marchantia polymorpha2012

    • Author(s)
      Ishizaki K., Nonomura M., Kato H., Yamato K.T., Kohchi T.
    • Journal Title

      Journal of Plant Research

      Volume: 125 Issue: 5 Pages: 826-834

    • DOI

      10.1007/s10265-012-0477-7

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of the plasma membrane H+-ATPase in the liverwort Marchantia polymorpha.2012

    • Author(s)
      Okumura M, Inoue S, Takahashi K, Ishizaki K, Kohchi T, Kinoshita T.
    • Journal Title

      Plant Physiology

      Volume: 159 Issue: 2 Pages: 826-834

    • DOI

      10.1104/pp.112.195537

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Composition and physiological function of the chloroplast NADH dehydrogenase-like complex in Marchantia polymorpha2012

    • Author(s)
      Ueda M., Kuniyoshi T., Yamamoto Y., Sugimoto K., Ishizaki K., Kohchi T., Nishimura Y. and Shikanai T
    • Journal Title

      Plant J.

      Volume: 72 Issue: 4 Pages: 683-693

    • DOI

      10.1111/j.1365-313x.2012.05115.x

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] 苔類ゼニゴケにおける転写因子レパートリー2014

    • Author(s)
      白川一、井上佳祐、石崎公庸、西浜竜一、河内孝之
    • Organizer
      55回 日本植物生理学会年会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Final Research Report
  • [Presentation] 苔類ゼニゴケにおける転写因子レパートリー2014

    • Author(s)
      白川一、井上佳祐、石崎公庸、西浜竜一、河内孝之
    • Organizer
      第55回 日本植物生理学会年会
    • Place of Presentation
      富山大学(富山市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゼニゴケから探るオーキシン応答の基本メカニズムとその進化2013

    • Author(s)
      石崎公庸、加藤大貴、河内孝之
    • Organizer
      第54回日本植物生理学会年会
    • Place of Presentation
      岡山大学
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 苔類ゼニゴケにおける光依存的な細胞分裂活性制御機構2013

    • Author(s)
      西浜竜一、石崎公庸、河内孝之
    • Organizer
      第77回日本植物学会大会
    • Place of Presentation
      北海道大学
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 苔類ゼニゴケにおけるAUX/IAA-ARF相互作用を介したオーキシン転写制御機構の解析2013

    • Author(s)
      加藤大貴、神埜勝、白川一、石崎公庸、西浜竜一、河内孝之
    • Organizer
      第77回日本植物学会大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 苔類ゼニゴケにおける転写因子PIFを介した赤色光シグナル伝達機構2013

    • Author(s)
      井上佳祐、石崎公庸、西浜竜一、河内孝之
    • Organizer
      第77回日本植物学会大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゼニゴケのオーキシン信号伝達因子MpARF1による無性芽発生制御2013

    • Author(s)
      神埜勝、加藤大貴、武田真由子、石崎公庸、西浜竜一、河内孝之
    • Organizer
      第77回日本植物学会大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゼニゴケ研究地平への投射 : オーキシン信号伝達を例に

    • Author(s)
      河内孝之、加藤大貴、西浜竜一、大和勝幸、石崎公庸
    • Organizer
      55回 日本植物生理学会年会
    • Place of Presentation
      富山大学S11-5
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] ゼニゴケ気室形成制御遺伝子NOPPERABO1の単離と解析

    • Author(s)
      水谷未耶,石崎公庸,増田晃秀,桐田啓如,西浜竜一,河内孝之
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大学(姫路市)
    • Related Report
      2012 Research-status Report
  • [Presentation] ゼニゴケ形態形成におけるMpIAAを介したオーキシン転写制御の多面的役割

    • Author(s)
      加藤大貴、石崎公庸、河内孝之
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大学(姫路市)
    • Related Report
      2012 Research-status Report
  • [Presentation] ゼニゴケのALTERED MERISTEM PROGRAM 1 (AMP1) 変異体はオーキシン低感受性を示す

    • Author(s)
      桐田啓如、武田真由子、石崎公庸、河内孝之
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大学(姫路市)
    • Related Report
      2012 Research-status Report
  • [Book] Plastid transformation of sporelings and suspension-cultured cells from the liverwort Marchantia polymorpha L., Method Mol.Biol.2014

    • Author(s)
      Chiyoda, S., Yamato, K. T., Kohchi,T.
    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.lif.kyoto-u.ac.jp/labs/plantmb

    • Related Report
      2013 Final Research Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi