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Establishment of an efficient TALE-mediated genome editing in plants

Research Project

Project/Area Number 24658283
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied molecular and cellular biology
Research InstitutionRitsumeikan University (2013-2014)
The University of Tokyo (2012)

Principal Investigator

TAKEDA Atsushi  立命館大学, 生命科学部, 准教授 (60560779)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsゲノム編集 / 植物 / TALEN / アラビドプシス / ゲノム改変 / TALE / TALER
Outline of Final Research Achievements

In this study, we established a Transcription Activator-Like Effector Nuclease (TALEN) system, which efficiently functions in plants. We first generated a TALE backbone and repeats in the TALE DNA binding domain according to the codon usage of a model plant, Arabidopsis thaliana. Our TALE system has several advantages compared to other plant TALEN systems previously reported. In addition, we developed a transient Luciferase (Luc) assay system, in which we are able to evaluate the efficiency of the binding ability of the assembled TALEs with the target DNA sequences in plants. By using this Luc assay system, we confirmed the abilities of the assembled TALENs before we start to generate transgenic plants. We successfully introduced deletion mutations by using our TALEN system in plants. The systems we developed in this study help contribute to the advances in plant research in future.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (21 results)

All 2015 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 7 results,  Open Access: 3 results) Presentation (13 results)

  • [Journal Article] Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection2015

    • Author(s)
      Garcia-Ruiz H., Carbonell A., Hoyer S. J., Fahlgren N., Gilbert K. B., Takeda A., Giampetruzzi A., Garcia-Ruiz M. T., McGinn M. G., Lowery N., Baladejo M. T. M. and Carrington J. C.
    • Journal Title

      PLoS Pathogens

      Volume: 11 Issue: 3 Pages: e1004755-e1004755

    • DOI

      10.1371/journal.ppat.1004755

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Localization of tobacco germin-like protein 1 in leaf intercellular space2014

    • Author(s)
      Kishi-Kaboshi M., Muto H., Takeda A., Murata T., Hasebe M. and Watanabe Y.
    • Journal Title

      Plant Physiology and Biochemistry

      Volume: 85 Pages: 1-8

    • DOI

      10.1016/j.plaphy.2014.10.005

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Studies on molecular mechanisms of RNA silencing-mediated anti-virus defense in plants and RNA silencing suppression by plant viruses2014

    • Author(s)
      Takeda A.
    • Journal Title

      Journal of General Plant Pathology

      Volume: 80 Issue: 6 Pages: 527-528

    • DOI

      10.1007/s10327-014-0548-9

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Recovery of dicer-like 1-late flowering phenotype by miR172 expressed by the non-canonical DCL4-dependent biogenesis pathway2014

    • Author(s)
      Tsuzuki M., Takeda A. and Watanabe Y.
    • Journal Title

      RNA

      Volume: 20 Issue: 8 Pages: 1320-1327

    • DOI

      10.1261/rna.044966.114

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] New generation of artificial microRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis2014

    • Author(s)
      Alberto Carbonell, Atsushi Takeda, Noah Fahlgren, Simon C. Johnson, Josh T. Cuperus and James C. Carrington
    • Journal Title

      Plant physiology

      Volume: 印刷中 Issue: 1 Pages: 15-29

    • DOI

      10.1104/pp.113.234989

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis AtRRP44A is the functional homolog of Rrp44/Dis3, an exosome component, is essential for viability and is required for RNA processing and degradation2013

    • Author(s)
      Naoyoshi Kumakura, Hiroka Otsuki, Masayuki Tsuzuki, Atsushi Takeda and Yuichiro Watanabe
    • Journal Title

      PLoS ONE

      Volume: 8 Issue: 11 Pages: e79219-e79219

    • DOI

      10.1371/journal.pone.0079219

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner2012

    • Author(s)
      Hayashi, M., C. Nanba, M. Saito, M. Kondo, A. Takeda, Y. Watanabe and M. Nishimura
    • Journal Title

      Plant Cell Physiol.

      Volume: 53 Issue: 7 Pages: 1310-1321

    • DOI

      10.1093/pcp/pcs078

    • NAID

      10030963643

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] The role of decapping proteins in the miRNA accumulation in Arabidopsis thaliana2012

    • Author(s)
      Kazuki Motomura, Quy T.N. Le, Naoyoshi Kumakura, Takashi Fukaya, Atsushi Takeda and Yuichi
    • Journal Title

      RNA Biology

      Volume: 9 Issue: 5 Pages: 644-652

    • DOI

      10.4161/rna.19877

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] AGO1-ウイルス由来siRNAの標的遺伝子予測を目指して2015

    • Author(s)
      唐戸俊介、白谷公孝、都筑正行、渡邊雄一郎、竹田篤史
    • Organizer
      第100回日本植物病理学会
    • Place of Presentation
      明治大学(東京都・千代田区)
    • Year and Date
      2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] 植物microRNAの特異性に関する研究2014

    • Author(s)
      唐戸俊介、都筑正行、白谷公孝、渡邊雄一郎、竹田篤史
    • Organizer
      第78回日本植物学会
    • Place of Presentation
      明治大学(神奈川県・川崎市)
    • Year and Date
      2014-09-12 – 2014-09-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] miR172強制発現によるシロイヌナズナDicer-like 1変異体の部分相補2014

    • Author(s)
      都筑正行、竹田篤史、渡邊雄一郎
    • Organizer
      第78回日本植物学会
    • Place of Presentation
      明治大学(神奈川県・川崎市)
    • Year and Date
      2014-09-12 – 2014-09-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] ウイルス抵抗性機構としてのRNA exosomeの解析2013

    • Author(s)
      熊倉直祐、大月陽路香、竹田篤史、渡邊雄一郎
    • Organizer
      日本植物病理学会
    • Place of Presentation
      岐阜市、岐阜県
    • Related Report
      2012 Research-status Report
  • [Presentation] Assessment of RNA exosome as a viral resistance factor2012

    • Author(s)
      Naoyoshi Kumakura, Atsushi Takeda and Yuichiro Watanabe
    • Organizer
      XV International Congress on Molecular Plant-Microbe Interactions
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2012 Research-status Report
  • [Presentation] シロイヌナズナにおけるDCL1に依存しないmicroRNAの発現系の構築2012

    • Author(s)
      都筑正行、竹田篤史、渡邊雄一郎
    • Organizer
      日本植物細胞分子生物学会
    • Place of Presentation
      生駒市、奈良県
    • Related Report
      2012 Research-status Report
  • [Presentation] A Putative Exosome Component is Essential for Female Gametophyte Development

    • Author(s)
      Naoyoshi Kumakura, Hiroka Otsuki, Atsushi Takeda and Yuichiro Watanabe
    • Organizer
      "Post-transcriptional Gene Regulation in Plants" A satellite meeting of Plant Biology 2013
    • Place of Presentation
      Providence, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] 植物の次世代への移行に必須なmicroRNAの探索

    • Author(s)
      都筑正行、竹田篤史、渡邊雄一郎
    • Organizer
      第5回日本RNAi研究会
    • Place of Presentation
      グランドプリンスホテル広島、広島県
    • Related Report
      2013 Research-status Report
  • [Presentation] シロイヌナズナにおけるDicer-like 1非依存的なmicroRNA発現系の構築

    • Author(s)
      都筑正行、竹田篤史、渡邊雄一郎
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアホテル、兵庫県
    • Related Report
      2013 Research-status Report
  • [Presentation] Arabidopsis AtRRP44A is the functional homolog of Rrp44/Dis3, an exosome component, is essential for viability and is required for RNA processing and degradation

    • Author(s)
      Naoyoshi Kumakura, Hiroka Otsuki, Atsushi Takeda and Yuichiro Watanabe
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアホテル、兵庫県
    • Related Report
      2013 Research-status Report
  • [Presentation] Construction of microRNA Expression System Independent of Dicer-Like 1 in Arabidopsis

    • Author(s)
      Masayuki Tsuzuki, Atsushi Takeda and Yuichiro Watanabe
    • Organizer
      Keystone Symposia: RNA Silencing
    • Place of Presentation
      Seattle, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] 植物microRNAによる遺伝子発現抑制の特異性に関する研究

    • Author(s)
      唐戸俊介、都筑正行、竹田篤史、渡邊雄一郎
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学、富山県
    • Related Report
      2013 Research-status Report
  • [Presentation] Analyses of Arabidopsis RRP44A, a catalytic center of RNA exosome

    • Author(s)
      Naoyoshi Kumakura, Hiroka Otsuki, Atsushi Takeda and Yuichiro Watanabe
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学、富山県
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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