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Development of a new metalloprotein based on the structure and function of metalloenzymes

Research Project

Project/Area Number 24658287
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied molecular and cellular biology
Research InstitutionKyoto University

Principal Investigator

MASUDA Taro  京都大学, (連合)農学研究科(研究院), 助教 (40395653)

Co-Investigator(Kenkyū-buntansha) MIKAMI Bunzo  京都大学, 大学院農学研究科, 教授 (40135611)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords蛋白質 / 立体構造 / 金属 / リガンド / メタロプロテイン / フェノールオキシダーゼ / キチナーゼ / フェリチン
Outline of Final Research Achievements

To establish the relationship between a protein and its metal ligand, we divided the research to the following two parts. 1. X-ray crystallographic studies on novel metal binding proteins, and 2. Designing a new metal binding protein based on the structure and function of known metalloproteins. As the results of the first approach, we determined the crystal structures of a copper binding prophenoloxidase from crustacean and a calcium accumulating class III chitinase from pomegranate. Further, we constructed a novel nickel binding protein based on the iron storage protein ferritin.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2015 2014 2013 2012

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Acknowledgement Compliant: 2 results,  Open Access: 2 results) Presentation (6 results)

  • [Journal Article] Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity.2015

    • Author(s)
      Masuda T., Zhao G. & Bunzo Mikami
    • Journal Title

      Biosci., Biotechnol. Biochem.

      Volume: 79 Issue: 1 Pages: 45-50

    • DOI

      10.1080/09168451.2014.962475

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The iron content and ferritin contribution in fresh, dried, and toasted nori, Pyropia yezoensis.2015

    • Author(s)
      Masuda T., Yamamoto A., & Toyohara H.
    • Journal Title

      Biosci., Biotechnol. Biochem.

      Volume: 79 Issue: 1 Pages: 74-81

    • DOI

      10.1080/09168451.2014.968087

    • NAID

      120005657918

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins.2014

    • Author(s)
      Masuda, T., Momoji, K., Hirata, T., Mikami, B.
    • Journal Title

      FEBS J.

      Volume: 281 Issue: 11 Pages: 2659-2673

    • DOI

      10.1111/febs.12812

    • NAID

      120005646484

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mass spectrometry-based N- and C-terminal sequence determination of a hepatopancreas-type prophenoloxidase from the kuruma prawn, Marsupenaeus japonicas.2013

    • Author(s)
      Hiroki Kuyama, Taro Masuda, Chihiro Nakajima, Kyosuke Momoji, Tatsuya Sugawara, Osamu Nishimura & Takashi Hirata
    • Journal Title

      Anal. Bioanal. Chem.

      Volume: 405 Issue: 7 Pages: 2333-2340

    • DOI

      10.1007/s00216-012-6653-8

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification and characterization of ferritin gene and its product from the multicellular green alga, Ulva pertusa.2012

    • Author(s)
      Morimoto S., Masuda T., Sugihara I. & Toyohara H.
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 76 Pages: 1913-1919

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A novel strategy by natural plant ferritin to protect DNA from oxidative damage during iron oxidation.2012

    • Author(s)
      Liao X., Lv C., Zhang X., Masuda T., Li M. & Zhao G.
    • Journal Title

      Free Radic. Biol. Med.

      Volume: 53 Issue: 2 Pages: 375-382

    • DOI

      10.1016/j.freeradbiomed.2012.05.003

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity2012

    • Author(s)
      Masuda T., Morimoto S., Mikami B. & Toyohara H.
    • Journal Title

      Protein Sci

      Volume: 21 Issue: 6 Pages: 786-796

    • DOI

      10.1002/pro.2061

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 立体構造が示唆する甲殻類フェノールオキシダーゼとヘモシアニンの機能的差異2014

    • Author(s)
      増田太郎、百次恭祐、平田孝、三上文三
    • Organizer
      日本水産学会2014年度秋期大会
    • Place of Presentation
      九州大学
    • Year and Date
      2014-09-24 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Crystal structure of a crustacean prophenoloxidase elucidates the functional difference of the type 3 copper proteins.2014

    • Author(s)
      Taro Masuda, Kyosuke Momoji, Takashi Hirata, Bunzo Mikami
    • Organizer
      欧州生物無機化学会(EUROBIC12)
    • Place of Presentation
      チューリッヒ大学
    • Year and Date
      2014-08-24 – 2014-08-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 甲殻類由来新規フェノールオキシダーゼの立体構造が示唆するタイプ3銅蛋白質の機能的際に関する分子基盤2014

    • Author(s)
      増田太郎、百次恭祐、平田孝、三上文三
    • Organizer
      日本蛋白質科学会2014年度年会
    • Place of Presentation
      ワークピア横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 新規フェノールオキシダーゼの立体構造が示唆するタイプ3銅蛋白質の機能分化について2014

    • Author(s)
      増田太郎、百次恭祐、平田孝、三上文三
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] N-末端ドメインが関与する植物型フェリチンの鉄放出機構2013

    • Author(s)
      増田太郎、森本晋一郎、三上文三、豊原治彦
    • Organizer
      日本農芸化学会大会
    • Place of Presentation
      東北大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 高等植物型フェリチンのN-末端領域の構造と機能2012

    • Author(s)
      増田太郎、森本晋一郎、三上文三、豊原治彦
    • Organizer
      日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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