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Loss of RNA modification and autoimmune diseases: a novel mechanism of the SLE pathogenesis

Research Project

Project/Area Number 24659476
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field 膠原病・アレルギー・感染症内科学
Research InstitutionUniversity of Miyazaki

Principal Investigator

KENMOCHI Naoya  宮崎大学, フロンティア科学実験総合センター, 教授 (00133124)

Co-Investigator(Renkei-kenkyūsha) TAKAYANAGI Atushi  慶應義塾大学, 医学部, 講師 (80245464)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsRNA修飾 / 自己免疫 / 抗RNA抗体 / リボソームRNA / snRNA / snoRNA / scaRNA / ゼブラフィッシュ / リボソーム / rRNA / ディスケリン / ゼブラフィッシュモデル / 自己免疫疾患 / 人工抗体
Outline of Final Research Achievements

Although RNAs are known to undergo various modifications, the physiological role of RNA modifications remains unknown. Since autoantibodies that bind to ncRNAs have been found in patients with autoimmune diseases, we speculate that RNA modification could be the marker for self-recognition. To investigate such possibility, we generated artificial anti-RNA antibodies that specifically bind to modified RNA molecules and developed zebrafish with loss of RNA modifications. We found that the RNA modification is essential for zebrafish development and dynamically regulates the expression of many relevant genes.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (29 results)

All 2015 2014 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 8 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (13 results) (of which Invited: 3 results) Book (1 results) Remarks (6 results)

  • [Journal Article] scaRNAs regulate splicing and vertebrate heart development.2015

    • Author(s)
      Patil P, Kibiryeva N, Uechi T, Marshall J, Artman M, O'Brien JE, Kenmochi N, Bittel DC.
    • Journal Title

      Biochem. Biophys. Acta (in press)

      Volume: 0 Pages: 0-0

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Incomplete splicing of neutrophil-specific genes affects neutrophil development in a zebrafish model of poikiloderma with neutropenia2015

    • Author(s)
      Patil P, Uechi T, Kenmochi N
    • Journal Title

      RNA Biology

      Volume: 12 Issue: 4 Pages: 426-434

    • DOI

      10.1080/15476286.2015.1017240

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Ribosomal protein deficiency causes Tp53-independent erythropoiesis failure in zebrafish2014

    • Author(s)
      Yadav V.G., Chakraborty A., Uechi T., and Kenmochi N.
    • Journal Title

      Int. J. Biochem. Cell Biol.

      Volume: 49 Pages: 1-7

    • DOI

      10.1016/j.biocel.2014.01.006

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] リボソーム病ーリボソーム合成の異常と疾患ー2013

    • Author(s)
      剣持 直哉
    • Journal Title

      生化学

      Volume: 85(10) Pages: 909-915

    • Related Report
      2013 Research-status Report
  • [Journal Article] snOPY : a small nucleolar RNA orthological gene database2013

    • Author(s)
      Yoshihama M., Nakao A., and Kenmochi N.
    • Journal Title

      BMC Research Notes

      Volume: 6 Issue: 1 Pages: 426-426

    • DOI

      10.1186/1756-0500-6-426

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] A detection method for intronic snoRNA genes using extended- weight-updating SOM with appearance probability of bases2013

    • Author(s)
      Yamamori K., Matsuo T., Iwakiri J., Kenmochi N., and Yoshihara I.
    • Journal Title

      Artificial Life and Robotics

      Volume: 17 Issue: 3-4 Pages: 405-411

    • DOI

      10.1007/s10015-012-0072-y

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 構造モデルに基づく塩基配列からのboxC/D型snoRNA遺伝子検出法2013

    • Author(s)
      山森一人
    • Journal Title

      情報処理学会論文誌:数理モデル化と応用

      Volume: 6(1) Pages: 79-89

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dissecting the protein-RNA interface : the role of protein surface shapes and RNA secondary structures in protein-RNA recognition2012

    • Author(s)
      Iwakiri J., Tateishi H., Chakraborty A., Patil P., and Kenmochi N.
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Issue: 8 Pages: 3299-3306

    • DOI

      10.1093/nar/gkr1225

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Loss of ribosomal RNA modification causes developmental defects in zebrafish2011

    • Author(s)
      Higa-Nakamine S, Suzuki T (第2著者) 他7名
    • Journal Title

      Nucleic Acids Research

      Volume: 40 Issue: 1 Pages: 391-398

    • DOI

      10.1093/nar/gkr700

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] snOPY and RPG: snoRNA遺伝子およびリボソームタンパク質遺伝子データベースの構築2015

    • Author(s)
      鎌田脩作, 吉浜麻生, 中尾彰宏, 上地珠代, 剣持直哉
    • Organizer
      第3回リボソームミーティング
    • Place of Presentation
      宮崎
    • Year and Date
      2015-03-17 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] ゼブラフィッシュ初期発生におけるRNA修飾の役割2014

    • Author(s)
      剣持直哉
    • Organizer
      第37回分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Incomplete splicing of myeloperoxidase gene affects Neutrophil Development in the Zebrafish model of Poikiloderma with Neutropenia2014

    • Author(s)
      Prakash Patil, Tamayo Uechi, Naoya Kenmochi
    • Organizer
      第37回分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Reduced Expression of scaRNAs Disrupts Spliceosome Function and Heart Development in Zebrafish and Infants with Tetralogy of Fallot2014

    • Author(s)
      Douglas C Bittel, Prakash Patil, Tamayo Uechi, Nataliya Kibiryeva, Jennifer Marshall, Mike Artman, James E O'Brien Jr, Naoya Kenmochi
    • Organizer
      American Heart Association Scientific Sessions
    • Place of Presentation
      Chicago, USA
    • Year and Date
      2014-11-15 – 2014-11-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] RPG and snOPY: Databases for ribosomal protein genes and small nucleolar RNA genes2014

    • Author(s)
      Maki Yoshihama, Akihiro Nakao, Shusaku Kamada, Naoya Kenmochi
    • Organizer
      The 19th Annual Meeting of the RNA Society
    • Place of Presentation
      Quebec, Canada
    • Year and Date
      2014-06-03 – 2014-06-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] A detection method for snoRNA modification domain by fully indexable dictionary retrieving2014

    • Author(s)
      Takayuki Yamamoto, Kunihito Yamamori, Naoya Kenmochi, Masaru Aikawa
    • Organizer
      AROB 19th 2014
    • Place of Presentation
      別府
    • Related Report
      2013 Research-status Report
  • [Presentation] リボソームRNAの修飾はゼブラフィッシュの初期発生に必須の役割を果たす2013

    • Author(s)
      剣持 直哉
    • Organizer
      第36回 日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] RPG and snOPY: リボソームタンパク質遺伝子およびsnoRNA遺伝子データベースの構築2013

    • Author(s)
      吉浜 麻生、中尾 彰宏、上地 珠代、剣持 直哉
    • Organizer
      第36回 日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Research-status Report
  • [Presentation] ゼブラフィッシュを用いたリボソーム病発症機構の解析2013

    • Author(s)
      剣持直哉
    • Organizer
      第2回 遺伝性貧血班班会議
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 構造モデルに基づく塩基配列からのboxC/D型snoRNA遺伝子検出法2012

    • Author(s)
      山森一人
    • Organizer
      第90回 数理モデル化と問題解決(MPS)研究会
    • Place of Presentation
      小樽
    • Related Report
      2012 Research-status Report
  • [Presentation] 機能性RNAの構造特異的な抗体のスクリーニング法の開発2012

    • Author(s)
      吉浜麻生
    • Organizer
      第36回 蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      宮崎
    • Related Report
      2012 Research-status Report
  • [Presentation] RNA修飾の欠損はゼブラフィッシュの初期発生に重大な影響を与える2012

    • Author(s)
      剣持直哉
    • Organizer
      第14回 日本RNA学会年会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] Impairment of Ribosomal RNA Modification Causes Developmental Defects in Zebrafish2012

    • Author(s)
      Naoya Kenmcohi
    • Organizer
      The 17th Annual Meeting of the RNA Society
    • Place of Presentation
      Ann Arbor, USA
    • Related Report
      2012 Research-status Report
  • [Book] eLS: Ribosomes and Ribosomal Proteins: More Than Just ‘Housekeeping’2012

    • Author(s)
      Chakraborty, A
    • Total Pages
      11
    • Publisher
      John Wiley & Sons Ltd
    • Related Report
      2012 Research-status Report
  • [Remarks] 剣持研究室ホームページ

    • URL

      http://ribosome.med.miyazaki-u.ac.jp/labo

    • Related Report
      2014 Annual Research Report
  • [Remarks] リボソームタンパク質遺伝子データベース

    • URL

      http://ribosome.med.miyazaki-u.ac.jp/

    • Related Report
      2014 Annual Research Report
  • [Remarks] snoRNA遺伝子データベース

    • URL

      http://snoopy.med.miyazaki-u.ac.jp/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 剣持研究室ホームページ

    • URL

      http://ribosome.med.miyazaki-u.ac.jp/labo/

    • Related Report
      2013 Research-status Report
  • [Remarks] snoRNA遺伝子データベース

    • URL

      http://snoopy.med.miyazaki-u.ac.jp/

    • Related Report
      2013 Research-status Report
  • [Remarks] リボソームタンパク質遺伝子データベース

    • URL

      http://ribosome.med.miyazaki-u.ac.jp/

    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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