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Research on efficient compilation and promotion of disease knowledge base

Research Project

Project/Area Number 24680027
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Library and information science/Humanistic social informatics
Research InstitutionNational Institute of Public Health

Principal Investigator

OKUMURA Takashi  国立保健医療科学院, その他部局等, 特命上席主任研究官 (50553400)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2013: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2012: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Keywords医療情報 / 疾患知識ベース / 診断支援システム
Research Abstract

Improvement of information systems for clinical practices requires a disease knowledge base that contains possible clinical findings and laboratory examination results for each disease. However, compilation of such knowledge base necessitates considerable time and money. Accordingly, this study proposed to hybridize the data for major diseases, manually compiled to guarantee necessary quality, and the data for rare diseases, automatically generated for broader coverage, in the aim of efficient compilation of practical disease knowledge base. Additionally, toward quality control of the resulting knowledge base, a diagnostic decision support system is built with a feedback mechanism to collect usage information to efficiently improve the quality of the disease knowledge base. The research yielded disease knowledge base and a diagnostic decision support system with practical quality, as well as various knowledge about automatic acquisition of disease knowledge out of medical literature.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • Research Products

    (20 results)

All 2014 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 2 results) Presentation (15 results) Remarks (2 results)

  • [Journal Article] Interpretation of laboratory examination results and their minimalist2013

    • Author(s)
      T. Okumura and Y. Tateishi
    • Journal Title

      The 26th IEEE International Symposium on Computer-Based Medical Systems(CBMS2013)

      Volume: (印刷中)

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Simple Approach to NTCIR-10 MedNLP task2013

    • Author(s)
      T. Okumura and Y. Tateishi
    • Journal Title

      10th NII Testbeds and Community for Information access Research

      Volume: (印刷中)

    • Related Report
      2012 Annual Research Report
  • [Journal Article] A lightweight approach for extracting disease-symptom relation with Meta〓toward automated generation of disease knowledge base2012

    • Author(s)
      T. Okumura and Y. Tateishi
    • Journal Title

      1st International Conference on Health Information Science(HIS2012)

      Pages: 164-172

    • DOI

      10.1007/978-3-642-29361-0_20

    • ISBN
      9783642293603, 9783642293610
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Hierarchical representation of differential diagnosis lists for clinical decision support systems2014

    • Author(s)
      T. Okumura and M. Tagawa
    • Organizer
      Workshop on Interdisciplinary Design of Pervasive Healthcare Applications (IDPHA2014)
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Expression of laboratory examination results in medical literature2014

    • Author(s)
      T. Okumura, E. Aramaki, and Y. Tateisi
    • Organizer
      Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing (BioTxtM 2014)
    • Related Report
      2013 Final Research Report
  • [Presentation] Classification and characterization of clinical finding expressions in medical literature2013

    • Author(s)
      T. Okumura, Y. Tateisi, and E. Aramaki
    • Organizer
      the IEEE International Conference on Bioinformatics and Biomedicine (BIBM2013)
    • Related Report
      2013 Final Research Report
  • [Presentation] Clinical vocabulary and Clinical finding concepts in medical literature2013

    • Author(s)
      T. Okumura, E. Aramaki, and Y. Tateisi
    • Organizer
      International Joint Conference on Natural Language Processing, Workshop on Natural Language Processing for Medical and Healthcare Fields
    • Related Report
      2013 Final Research Report
  • [Presentation] 疾患知識ベースのcommunity-driven currationと診断支援プラットフォーム2013

    • Author(s)
      奥村貴史,荒牧英治,建石由佳
    • Organizer
      第30回セマンティックウェブとオントロジー研究会
    • Related Report
      2013 Final Research Report
  • [Presentation] Interpretation of laboratory examination results and their simple representation2013

    • Author(s)
      T. Okumura and Y. Tateisi
    • Organizer
      IEEE International Symposium on Computer-Based Medical Systems (CBMS2013)
    • Related Report
      2013 Final Research Report
  • [Presentation] 医療用自然言語処理の実用的課題と戦略的テストベッドとしての診断支援プラットフォーム2013

    • Author(s)
      奥村貴史
    • Organizer
      言語処理学会第19回年次大会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Final Research Report 2012 Annual Research Report
  • [Presentation] 集合知と診断支援プラットフォーム2013

    • Author(s)
      奥村貴史
    • Organizer
      東京大学知の構造化センターシンポジウム2013
    • Place of Presentation
      東京大学
    • Related Report
      2013 Final Research Report 2012 Annual Research Report
  • [Presentation] A Simple Approach to NTCIR-10 MedNLP task2013

    • Author(s)
      Y. Tateisi and T. Okumura
    • Organizer
      10th NTCIR Conference, MEDNLP Track
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Classification and characterization of clinical finding expressions in medical literature2013

    • Author(s)
      T. Okumura, Y. Tateisi, and E. Aramaki
    • Organizer
      IEEE International Conference on Bioinformatics and Biomedicine (BIBM2013)
    • Place of Presentation
      Beijing, China
    • Related Report
      2013 Annual Research Report
  • [Presentation] A lightweight approach for extracting disease-symptom relation with MetaMap toward automated generation of disease knowledge base2012

    • Author(s)
      T. Okumura, and Y. Tateishi
    • Organizer
      1st International Conference on Health Information Science (HIS 2012)
    • Related Report
      2013 Final Research Report
  • [Presentation] Expression of laboratory examination results in medical literature

    • Author(s)
      T. Okumura, E. Aramaki, and Y. Tateisi
    • Organizer
      Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing (BioTxtM 2014)
    • Place of Presentation
      Reykjavik, Iceland
    • Related Report
      2013 Annual Research Report
  • [Presentation] Clinical vocabulary and Clinical finding concepts in medical literature

    • Author(s)
      T. Okumura, E. Aramaki, and Y. Tateisi
    • Organizer
      International Joint Conference on Natural Language Processing, Workshop on Natural Language Processing for Medical and Healthcare Fields
    • Place of Presentation
      名古屋
    • Related Report
      2013 Annual Research Report
  • [Presentation] 疾患知識ベースのcommunity-driven curration と診断支援プラットフォーム

    • Author(s)
      奥村貴史, 荒牧英治, 建石由佳
    • Organizer
      第30 回セマンティックウェブとオントロジー研究会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Interpretation of laboratory examination results and their simple representation

    • Author(s)
      T. Okumura and Y. Tateisi
    • Organizer
      IEEE International Symposium on Computer-Based Medical Systems (CBMS2013)
    • Place of Presentation
      Porto, Portugal
    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://mednlp.m-crisis.wide.ad.jp

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://mednlp.m-crisis.wide.ad.jp/

    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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