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Quantitative analysis of the proteorhodopsin-mediated sunlight energy that flows through marine ecosystem

Research Project

Project/Area Number 24681003
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Environmental dynamic analysis
Research InstitutionThe University of Tokyo

Principal Investigator

YOSHIZAWA Susumu  東京大学, 大気海洋研究所, 講師 (00553108)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥25,350,000 (Direct Cost: ¥19,500,000、Indirect Cost: ¥5,850,000)
Fiscal Year 2014: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2012: ¥14,690,000 (Direct Cost: ¥11,300,000、Indirect Cost: ¥3,390,000)
Keywordsロドプシン / プロテオロドプシン / 物質循環 / 海洋細菌 / 微生物海洋学 / 光エネルギー / 生物海洋 / 微生物ゲノム
Outline of Final Research Achievements

The aim of this study is to evaluate the proteorhodopsin-mediated sunlight energy flow. In the beginning of the study, proteorhodopsin (PR) was the only type 1 rhodopsin found in marine bacteria. Therefore, the first research plan was designed only for the proteorhodopsin-mediated phototrophy. However, novel type 1 rhodopsins, such as sodium ion pumping rhodopsin (NaR) and chloride ion pumping rhodopsin (ClR), were discovered in marine flavobacteria by the genomic analysis and reported by our group during the research period. This result shows the ways of rhodopsin-mediated light utilization are more diverse than previously thought. In the future, investigating the light use efficiency of each rhodopsin is needed for the evaluation of the rhodopsin-mediated sunlight energy flow.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (30 results)

All 2015 2014 2013 2012 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (21 results) (of which Invited: 1 results) Remarks (2 results)

  • [Journal Article] Pelagitalea pacifica gen. nov., sp. nov., a New Marine Bacterium Isolated from Seawater2015

    • Author(s)
      Hyunsang Lee, Susumu Yoshizawa, Kazuhiro Kogure, Hyun Soo Kim and Jaewoo Yoon
    • Journal Title

      Current Microbiology

      Volume: 70 Issue: 4 Pages: 514-519

    • DOI

      10.1007/s00284-014-0750-1

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence of Winogradskyella sp. PG-2, a Proteorhodopsin-Containing Marine Flavobacterium2014

    • Author(s)
      Yohei Kumagai, Susumu Yoshizawa, Kenshiro Oshima, Masahira Hattori, Wataru Iwasaki, and Kazuhiro Kogure
    • Journal Title

      Genome announcements

      Volume: 2

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.2014

    • Author(s)
      Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong, and Kazuhiro Kogure.
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 111 Issue: 18 Pages: 6732-6737

    • DOI

      10.1073/pnas.1403051111

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from Pacific ocean2013

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Yuki Muramatsu, Yasuyoshi Nakagawa, Akira Yokota and Kazuhiro Kogure
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 63 Issue: Pt_5 Pages: 1885-1890

    • DOI

      10.1099/ijs.0.045104-0

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rubrivirga marina gen. nov., sp. nov., a member of the family Rhodothermaceae isolated for deep seawater2013

    • Author(s)
      Sanghwa Park, Jaeho Song, Susumu Yoshizawa, Ahyoung Choi, Jang-cheon Cho, Kazuhiro Kogure.
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 63(Pt 6) Issue: Pt_6 Pages: 2229-33

    • DOI

      10.1099/ijs.0.046318-0

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] "A light-driven sodium ion pump in marine bacteria"2013

    • Author(s)
      K. Inoue, H. Ono, R. Abe-Yoshizumi, S. Yoshizawa, H. Ito, K. Kogure, H. Kandori
    • Journal Title

      Nature Commun.

      Volume: 4 Issue: 1 Pages: 1678-1678

    • DOI

      10.1038/ncomms2689

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nonlabens marina sp. nov., a novel marine bacterium isolated from Pacific Ocean2012

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Chiura hiroshi xavier, Yuki Muramatsu,Yasuyoshi Nakagawa, Kazuhiro Kogure and Akira Yokota
    • Journal Title

      Antonie Van Leeuwenhoek

      Volume: 102 Issue: 4 Pages: 669-676

    • DOI

      10.1007/s10482-012-9765-4

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Functional diversification in bacterial rhodopsins: a new class of light-driven Cl- pumps in marine flavobacteria2015

    • Author(s)
      Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong and Kazuhiro Kogure
    • Organizer
      International Symposium on Genome Science 2015 "Expanding Frontiers of Genome Science II"
    • Place of Presentation
      一橋講堂, 東京
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] ゲノム解析が切り開く微生物の新しい光エネルギー機構2014

    • Author(s)
      吉澤晋
    • Organizer
      次世代ゲノム科学の最前線, 文部科学省科学研究費新学術領域研究「ゲノム支援」公開シンポジウム
    • Place of Presentation
      東京国際フォーラム. 東京
    • Year and Date
      2014-12-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Light-driven transmembrane H +, Na+ and Cl- pumping is mediated by three different rhodopsins in a marine flavobacterium2014

    • Author(s)
      Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong, and Kazuhiro Kogure
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松アクトシティコングレスセンター.浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大規模比較ゲノム解析が明らかにする、プロテオロドプシンを持つ海洋細菌のゲノム進化2014

    • Author(s)
      熊谷洋平,吉澤晋,福永津嵩,渡辺麻衣,池内昌彦,小椋義俊,林哲也,木暮一啓,岩崎渉
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松アクトシティコングレスセンター.浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 青色光を吸収するプロテオロドプシンの結晶構造解析2014

    • Author(s)
      Toshiaki Hosaka, Susumu Yoshizawa, Tomomi Kimura-Someya, Rojan Shrestha, Muhammad Muddassar, Kam Y. J. Zhang, Masakatsu Hato, Kazuhiro Kogure, Wataru Iwasaki, Mikako Shirouzu, and Shigeyuki Yokoyama
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館,京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 比較ゲノム解析によるプロテオロドプシン及びレチナール合成系の進化史の解明2014

    • Author(s)
      熊谷洋平,吉澤晋,木暮一啓,岩崎渉
    • Organizer
      NGS現場の会第三回研究会
    • Place of Presentation
      神戸国際会議場. 神戸
    • Year and Date
      2014-09-04 – 2014-09-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] Gains and losses of proteorhodopsin genes affect genomic evolution2014

    • Author(s)
      Yohei Kumagai, Susumu Yoshizawa, Tsukasa Fukunaga, Yoshitoshi Ogura, Tetsuya Hayashi, Edward F. DeLong, Kazuhiro Kogure, Wataru Iwasaki
    • Organizer
      15th International Society for Microbial Ecology
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] A light-induced sodium ion pumping rhodopsin in marine flavobacteria2014

    • Author(s)
      Susumu Yoshizawa, Kazuhiro Kogure and Edward F. DeLong
    • Organizer
      114th ASM (American society for microbiology) general meeting
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2014-05-17 – 2014-05-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Changes in the growth physiology of different proteorhodopsin-containing marine flavobacteria at low and high nutrient concentrations2014

    • Author(s)
      Michael Valliere, Hana Kim, Susumu Yoshizawa and Edward F. DeLong
    • Organizer
      Ocean Science Meeting
    • Place of Presentation
      Hawaii, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Light-driven sodium pumps in marine bacteria: a new type of microbial rhodopsin2014

    • Author(s)
      Susumu Yoshizawa, Kazuhiro Kogure and Edward F. DeLong
    • Organizer
      Ocean Science Meeting
    • Place of Presentation
      Hawaii, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Quantification of the proton pump activity of proteorhodopsin in Vibrio campbellii2013

    • Author(s)
      Yu Nakajima, Susumu Yoshizawa, Kazuhiro Kogure
    • Organizer
      13th Aquatic Microbial Ecology (SAME13)
    • Place of Presentation
      Stresa, Italy
    • Related Report
      2013 Annual Research Report
  • [Presentation] Light-driven sodium pump, a new type of rhodopsin2013

    • Author(s)
      Susumu Yoshizawa and Kazuhiro Kogure
    • Organizer
      5th Taiwan-Korea-Japana International Symposium on Microbial Ecology
    • Place of Presentation
      Jhongli, Taiwan
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分子生物学的アプローチに基づく微生物生態学に必要とされる分類学的知見とは?2012

    • Author(s)
      吉澤晋
    • Organizer
      第32回日本微生物系統分類研究会年次大会
    • Place of Presentation
      産業技術総合研究所(招待講演)
    • Year and Date
      2012-11-16
    • Related Report
      2012 Annual Research Report
  • [Presentation] 海洋細菌の持つロドプシン-新しい光エネルギー利用機構-2012

    • Author(s)
      吉澤晋
    • Organizer
      第1回日本細胞共生学会若手の会
    • Place of Presentation
      下田臨海実験センター
    • Year and Date
      2012-11-07
    • Related Report
      2012 Annual Research Report
  • [Presentation] クロロフィルとロドプシン 光をめぐる奇妙な関係2012

    • Author(s)
      吉澤晋
    • Organizer
      第7回日本光合成学会若手の会
    • Place of Presentation
      中房温泉
    • Year and Date
      2012-10-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] Impact of Proteorhodopsin-mediated phototrophy in marine environment2012

    • Author(s)
      Susumu Yoshizawa, Akira Kawanabe, Hiroyasu Ito, Hideki Kandori and Kazuhiro Kogure
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      Ascona, Switzerland
    • Year and Date
      2012-10-01
    • Related Report
      2012 Annual Research Report
  • [Presentation] 培養法で切り拓くロドプシンの新生物機能2012

    • Author(s)
      吉澤晋
    • Organizer
      第28回日本微生物生態学会
    • Place of Presentation
      豊橋技術科学大学(招待講演)
    • Year and Date
      2012-09-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] Proteorhodopsin-mediated phototrophy in marine Flavobacteria2012

    • Author(s)
      Susumu Yoshizawa, Akira Kawanabe, Hiroyasu Ito, Hideki Kandori and Kazuhiro Kogure
    • Organizer
      14th International Society for Microbial Ecology
    • Place of Presentation
      Copenhagen, Denmark(招待講演)
    • Year and Date
      2012-08-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] Diversity and functional analysis of proteorhodopsin in marine Flavobacteria2012

    • Author(s)
      Susurau Yoshizawa, Akira Kawanabe, Hiroyasu Ito, Hideki Kandori and Kazuhiro Kogure
    • Organizer
      ASLO (Association for the Sciences of Limnology and Oceanography) Aquatic Science Meeting
    • Place of Presentation
      Shiga, Japan
    • Year and Date
      2012-07-09
    • Related Report
      2012 Annual Research Report
  • [Presentation] Proteorhodopsin-mediated phototrophy in marine Flavobacteria2012

    • Author(s)
      Susumu Yoshizawa
    • Organizer
      CREST International Workshop on Aquatic Microbial Ecology
    • Place of Presentation
      Kashiwa-campus, Japan
    • Year and Date
      2012-07-06
    • Related Report
      2012 Annual Research Report
  • [Presentation] Quantitative estimation of contribution of proteorhodopsin to energy cycle in the ocean2012

    • Author(s)
      Susumu Yoshizawa and Kazuhro Kogure
    • Organizer
      Joint Symposium on Ocean, Coastal, and Atmospheric Sciences
    • Place of Presentation
      University of Hawaii, U.S.
    • Year and Date
      2012-06-14
    • Related Report
      2012 Annual Research Report
  • [Remarks] 海洋細菌で見つけた新しい光エネルギー利用機構 -塩化物イオンを輸送するポンプの発見-

    • URL

      http://www.aori.u-tokyo.ac.jp/research/news/2014/20140408.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 海洋細菌で見つけた新しい光エネルギー利用機構 -塩化物イオンを輸送するポンプの発見-

    • URL

      http://www.aori.u-tokyo.ac.jp/research/news/2014/20140408.html

    • Related Report
      2013 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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