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High-sensitive proteomic analysis of proteins modified in response to DNA damage.

Research Project

Project/Area Number 24681009
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Risk sciences of radiation/Chemicals
Research Institution独立行政法人医薬基盤研究所

Principal Investigator

ADACHI Jun  独立行政法人医薬基盤研究所, その他部局等, 研究員 (20437255)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥26,650,000 (Direct Cost: ¥20,500,000、Indirect Cost: ¥6,150,000)
Fiscal Year 2014: ¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Fiscal Year 2013: ¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Fiscal Year 2012: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
KeywordsDNA損傷応答 / シグナル伝達 / 翻訳後修飾 / プロテオミクス / 質量分析 / プロテオーム / リン酸化 / ユビキチン化
Outline of Final Research Achievements

In order to gain broader insight into the phosphorylation signal controlling DNA damage response (DDR), system-wide analysis of phosphorylation dynamics after gamma irradiation has been investigated. 25971 phosphosites were identified with accurate quantification. 6555 phosphosites displayed dynamic changes in phosphorylation status during one hour after irradiation. We identified distinct dynamic phosphorylation patterns of kinases, which had not been known to be associated with DNA damage, by the bioinformatics analysis based on matching sequence motif and protein-protein interaction. We found that DNA damage signaling is activated and colony formation is inhibited by the inhibition of the kinases.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (13 results)

All 2014 2013 2012

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (9 results)

  • [Journal Article] Proteome-wide discovery of unknown ATP-binding proteins and kinase inhibitor target proteins using an ATP probe.2014

    • Author(s)
      Jun Adachi, Marina Kishida, Shio Watanabe, Yuuki Hashimoto, Kazuna Fukamizu, Takeshi Tomonaga.
    • Journal Title

      Journal of proteome research

      Volume: 13 Issue: 12 Pages: 5461-5470

    • DOI

      10.1021/pr500845u

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel mechanism of keratin cytoskeleton organization through casein kinase I alpha and FAM83H in colorectal cancer.2013

    • Author(s)
      Kuga, T., Kume, H., Kawasaki, N., Sato, M., Adachi, J., Shiromizu, T., Hoshino, I., Nishimori, T., Matsubara, H., and Tomonaga T.
    • Journal Title

      J Cell Sci

      Volume: 126 Pages: 4721-31

    • DOI

      10.1242/jcs.129684

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Missing Proteins in the nextProt Database and Unregistered Phosphopeptides in the PhosphoSitePlus Database As Part of the Chromosome-Centric Human Proteome Project2013

    • Author(s)
      Takasi Shiromizu
    • Journal Title

      Journal of Proteome Research

      Volume: (in press)

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In-depth Membrane Proteomic Study of Breast Cancer Tissues for the Generation of a Chromosome-based Protein List2012

    • Author(s)
      Muraoka S, Kume H, Adachi J, Shiromizu T, Watanabe S, Masuda T, Ishihama Y, Tomonaga T
    • Journal Title

      J Proteome Res

      Volume: 12(1) Issue: 1 Pages: 208-13

    • DOI

      10.1021/pr300824m

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Kinome and ATPome-wide selectivity profiling of ATP-competitive kinase inhibitors.2014

    • Author(s)
      Jun Adachi, Takeshi Tomonaga
    • Organizer
      第73回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ATP Accessibility Screening (AAS), a high-throughput and high-resolution kinase analysis platform for signaling research2013

    • Author(s)
      1. Adachi J, Higo D, Kishida M, Watanabe S, Kuwano M, Hashimoto Y, Fukamizu K, Nishiwaki E, Tomonaga T
    • Organizer
      Human Proteome Organization (HUPO) 12th annual congress
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA損傷初期応答シグナル解析から創薬標的の探索へ2012

    • Author(s)
      足立淳
    • Organizer
      第10回北里疾患プロテオーム研究会
    • Place of Presentation
      神奈川
    • Year and Date
      2012-08-23
    • Related Report
      2012 Annual Research Report
  • [Presentation] ATP Accessibility Screening (AAS), a high-throughput and high-resolution kinase analysis platform for signaling research2012

    • Author(s)
      Jun Adachi
    • Organizer
      2nd Copenhagen Bioscience Conference
    • Place of Presentation
      Copenhagen, Denmark
    • Related Report
      2012 Annual Research Report
  • [Presentation] Phosphorylation dynamics in an early response of DNA damage signaling2012

    • Author(s)
      Jun Adachi
    • Organizer
      HUPO2012
    • Place of Presentation
      Boston, U.S.A
    • Related Report
      2012 Annual Research Report
  • [Presentation] Global phosphorylation and ubiquitination dynamics in DNA-damage response network2012

    • Author(s)
      Jun Adachi
    • Organizer
      Asia Oceania Human Proteome Organization (AOHUPO)6th congress
    • Place of Presentation
      Beijing, China
    • Related Report
      2012 Annual Research Report
  • [Presentation] リン酸化プロテオミクスを用いた新規DNA損傷初期応答キナーゼの探索2012

    • Author(s)
      足立淳
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      札幌
    • Related Report
      2012 Annual Research Report
  • [Presentation] リン酸化プロテオミクスを用いた新規DNA損傷初期応答キナーゼの探索2012

    • Author(s)
      足立淳
    • Organizer
      日本放射線影響学会第55回大会
    • Place of Presentation
      仙台(招待講演)
    • Related Report
      2012 Annual Research Report
  • [Presentation] リン酸化プロテオミクスを用いた新規DNA損傷初期応答キナーゼの探索2012

    • Author(s)
      足立淳
    • Organizer
      日本プロテオーム学会2012
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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