• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Dissection of epigenome dynamics of germ cel specification pathway through establishement of a ChIP-seq method from small number of cells

Research Project

Project/Area Number 24681039
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Genome biology
Research InstitutionKyoto University

Principal Investigator

KURIMOTO Kazuki  京都大学, 医学(系)研究科(研究院), 助教 (20415152)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥23,010,000 (Direct Cost: ¥17,700,000、Indirect Cost: ¥5,310,000)
Fiscal Year 2014: ¥10,660,000 (Direct Cost: ¥8,200,000、Indirect Cost: ¥2,460,000)
Fiscal Year 2013: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2012: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
KeywordsChIP-seq / BLIMP1 / primordial germ cell / 始原生殖細胞 / 微量 / 次世代シークエンサー / 生殖細胞 / エピゲノム / PGC / Blimp1 / Blimpl
Outline of Final Research Achievements

The identity of all of the cells that comprise induviduals are defined by the cellular epigenom in the nuclei. Due to technical limitation,genome-wide analysis of binding sites of transcriptional regulators are almost limited to cell types for which many cells are abvailable, including hematopoietic cells and cultured cells. I established a method for ChIP-seq of transcriptiopn factors from small number of cells and enabled identification of the genome-wide binding sites of transcription factor at 1/100 ~ 1/1000 time previous scale. Using thise method, Using this method, I determined binding sites of two key transcription factors for germ cell specificatin pathway, BLIMP1 and T (Brachyury), in vitro. In addition, I determined representative histone modifications associated to active transcription and repression, and revealed landscape of chromatin dynamics during the PGC specifciation in vitro.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (11 results)

All 2015 2014 2013 2012

All Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (1 results)

  • [Journal Article] Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells2015

    • Author(s)
      Kurimoto, K., Yabuta, Y., Hayashi, K., Ohta, H., Kiyonari, H., Mitani, T., Moritoki, Y., Kohri, K., Kimura, H., Yamamoto, T., Katou, Y., Shirahige, K., Saitou, M.
    • Journal Title

      Cell Stem Cell

      Volume: 16 Issue: 5 Pages: 517-532

    • DOI

      10.1016/j.stem.2015.03.002

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] SC3-seq: a method for highly parallel and quantitative measurement of single-cell gene expression2015

    • Author(s)
      Nakamura, T., Yabuta, Y., Okamoto, I., Aramaki, S., Yokobayashi, S., Kurimoto, K., Sekiguchi, K., Nakagawa, M., Yamamoto, T., Saitou, M.
    • Journal Title

      Nucleic Acids Res

      Volume: - Issue: 9 Pages: e60-e60

    • DOI

      10.1093/nar/gkv134

    • NAID

      120005825922

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Paternal nucleosomes: are they retained in developmental promoters or gene deserts?2014

    • Author(s)
      Saitou, M., Kurimoto, K.
    • Journal Title

      Dev Cell

      Volume: 30 Issue: 1 Pages: 6-8

    • DOI

      10.1016/j.devcel.2014.06.025

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages2014

    • Author(s)
      Ohnishi, Y., Huber, W., Tsumura, A., Kang, M., Xenopoulos, P., Kurimoto, K., Oles, A. K., Arauzo-Bravo, M. J., Saitou, M., Hadjantonakis, A. K., Hiiragi, T.
    • Journal Title

      Nat Cell Biol

      Volume: 16 Issue: 1 Pages: 27-37

    • DOI

      10.1038/ncb2881

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CCR1-mediated accumulation of myeloid cells in the liver microenvironment promoting mouse colon cancer metastasis2014

    • Author(s)
      Hirai H, Fujishita T, Kurimoto K, Miyachi H, Kitano S, Inamoto S, Itatani Y, Saitou M, Maekawa T, Taketo MM
    • Journal Title

      Clin Exp Metastasis

      Volume: 31 Issue: 8 Pages: 977-989

    • DOI

      10.1007/s10585-014-9684-z

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants2013

    • Author(s)
      Aramaki, S., Hayashi, K., Kurimoto, K., Ohta, H., Yabuta, Y., Iwanari, H., Mochizuki, Y., Hamakubo, T., Kato, Y., Shirahige, K., and Saitou, M
    • Journal Title

      Developmental Cell

      Volume: 27 Issue: 5 Pages: 516-529

    • DOI

      10.1016/j.devcel.2013.11.001

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Induction of mouse germ-cell fate by transcription factors in vitro.2013

    • Author(s)
      Nakaki F, Hayashi K, Ohta H, Kurimoto K, Yabuta Y, Saitou M.
    • Journal Title

      Nature

      Volume: 501 Issue: 7466 Pages: 222-226

    • DOI

      10.1038/nature12417

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Replication-coupled passive DNA demethylation for the erasure of genome imprints in mice2013

    • Author(s)
      Kagiwada, S., Kurimoto, K., Hirota, T., Yamaji, M., and Saitou, M
    • Journal Title

      The EMBO Journal

      Volume: 32 Issue: 3 Pages: 340-353

    • DOI

      10.1038/emboj.2012.331

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells2013

    • Author(s)
      Yamaji, M., Ueda, J., Hayashi, K., Ohta, H., Yabuta, Y., Kurimoto, K., Nakato, R., Shirahige, K., and Saitou, M
    • Journal Title

      Cell Stem Cell

      Volume: 12 Issue: 3 Pages: 368-382

    • DOI

      10.1016/j.stem.2012.12.012

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Offspring from oocytes derived from in vitro primordial germ cell-like cells in mice2012

    • Author(s)
      Hayashi, K., Ogushi, S., Kurimoto, K., Shimamoto, S., Ohta, H., Saitou, M
    • Journal Title

      Science

      Volume: 338 Issue: 6109 Pages: 971-975

    • DOI

      10.1126/science.1226889

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] A method for ChlP-seq of transcription factors in small cell numbers2012

    • Author(s)
      tazuki Kurimoto. Mitinori Saitou
    • Organizer
      nternational Joint Symposium on Single-Cell Analysis
    • Place of Presentation
      Kyoto Research Park
    • Related Report
      2012 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi