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Analysis of coordination mechanism of multiple bio-molecules using DNA-origami base molecular nano-layout technology.

Research Project

Project/Area Number 24687018
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Biophysics
Research InstitutionKyoto University (2014)
The University of Tokyo (2012-2013)

Principal Investigator

TADAKUMA Hisashi  京都大学, 物質-細胞統合システム拠点, 研究員 (10339707)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥27,300,000 (Direct Cost: ¥21,000,000、Indirect Cost: ¥6,300,000)
Fiscal Year 2014: ¥8,840,000 (Direct Cost: ¥6,800,000、Indirect Cost: ¥2,040,000)
Fiscal Year 2013: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Fiscal Year 2012: ¥9,750,000 (Direct Cost: ¥7,500,000、Indirect Cost: ¥2,250,000)
Keywords1分子計測・操作 / ナノマシン / 蛋白質 / 核酸 / 1分子計測 / 分子モーター
Outline of Final Research Achievements

In the cell, many factors orchestrate complicated but elegant system. However, how multiple biomolecules are coordinated each other remains elusive. Here we created gene nano-chip using DNA-Origami-tile as the skeletal structure and RNA polymerase (RNAP) as the functional module, allowing us a rational design of orthogonal gene expression device. Our approach of integrating biomolecules on DNA-origami-tile base nano-chip might contribute to explore the precise mechanism of fundamental phenomena and also to develop nano-devices.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (27 results)

All 2015 2014 2013 2012

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 2 results) Presentation (22 results) (of which Invited: 3 results) Book (2 results)

  • [Journal Article] Defining fundamental steps in the assembly of Drosophila RNAi enzyme complex2015

    • Author(s)
      Shintaro Iwasaki, Hiroshi M. Sasaki, Yuriko Sakaguchi, Tsutomu Suzuki, Hisashi Tadakuma, & Yukihide Tomari
    • Journal Title

      Nature

      Volume: NA Issue: 7553 Pages: 0-0

    • DOI

      10.1038/nature14254

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Single-molecule analysis of the target cleavage reaction by Drosophila RNAi enzyme complex2015

    • Author(s)
      Yao C, Sasaki HM, Ueda T, *Tomari Y, *Tadakuma H
    • Journal Title

      Molecular Cell (in press)

      Volume: - Issue: 1 Pages: 125-132

    • DOI

      10.1016/j.molcel.2015.05.015

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Type l IFN inhibits the growth factor deprived apoptosis of cultured human aortic endothelial cells and protects the cells from chemically induced oxidative cytotoxicity2012

    • Author(s)
      Sano E, Tashiro S, Tadakuma H. Takei T, Ueda T, Tsumoto K
    • Journal Title

      J Cellular Biochem

      Volume: 113 Issue: 12 Pages: 3823-3824

    • DOI

      10.1002/jcb.24259

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 生物遺伝子発現システムを集積化したバイオナノチップの構築に向けて2014

    • Author(s)
      増渕岳也、多田隈尚史、遠藤政幸、原田慶恵、杉山弘、上田卓也
    • Organizer
      計測自動制御学会 システム・情報部門学術講演会 2014 (SSI2014)
    • Place of Presentation
      岡山大学 創立五十周年記念館
    • Year and Date
      2014-11-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] Defining fundamental steps in the assembly of Drosophila RNAi enzyme complex2014

    • Author(s)
      Sasaki HM, Iwasaki S, Sakaguchi Y, Suzuki T, Tadakuma H, Tomari Y
    • Organizer
      Cell Symposia "Regulatory RNAs"
    • Place of Presentation
      Berkeley (米国・CA)
    • Year and Date
      2014-10-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Rational design of orthogonal gene transcription nano device on DNA origami2014

    • Author(s)
      Masubuchi T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      第87回日本生化学会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of ATP-dependent chromatin remodeling complexes using fluorescently labeled nucleosome2014

    • Author(s)
      韓龍雲, 津中康央, 横田浩章, 山田和弘, 大西舞, 山崎冴果, 末武勲, 田嶋正二, 多田隈尚史, 原田 慶恵
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Cross-linking the dynein-microtubule complex by DNA origami2014

    • Author(s)
      広瀬恵子, 厳康敏, 多田隈尚史
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Rational design of orthogonal gene transcription nano device on DNA origami2014

    • Author(s)
      Masubuchi T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA origamiを用いた直交性のある転写ナノデバイスの構築2014

    • Author(s)
      Masubuchi T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学津島キャンパス
    • Year and Date
      2014-09-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA origamiを用いた直交性のある転写ナノデバイスの構築2014

    • Author(s)
      Masubuchi T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      名古屋市・ウインクあいち
    • Year and Date
      2014-07-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] RISC 切断過程の蛍光1 分子解析2014

    • Author(s)
      姚春艶、多田隈尚史、佐々木浩、泊幸秀、上田卓也
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      名古屋市・ウインクあいち
    • Year and Date
      2014-07-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] タンパク質翻訳と共役した分子シャペロン動態の1分子蛍光イメージング2014

    • Author(s)
      丹羽達也、多田隈尚史、伊藤耕一、上田卓也、田口英樹
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜 / 横浜産貿ホール マリネリア
    • Year and Date
      2014-06-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNAナノ構造を用いたナノ転写チップの構築: ナノ反応場における転写活性2014

    • Author(s)
      多田隈尚史
    • Organizer
      第66回日本細胞生物学会大会
    • Place of Presentation
      奈良県新公会堂
    • Year and Date
      2014-06-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] High-resolution Thermodynamic Analysis of ABC-Transporter MsbA Reconstituted in Nanodiscs.2014

    • Author(s)
      Kawai T, Tadakuma H, Caaveiro JMM, Tsumoto K, Ueda T
    • Organizer
      Biophysical meeting
    • Place of Presentation
      Moscone Center (米国・CA)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Construction and functional analysis of DNA origami base DNA-RNAP hybrid nanomachine2013

    • Author(s)
      Masubuchi T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      日本生物物理学会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Designing the nano-reaction field: Introduction and application to motor protein research2013

    • Author(s)
      Tadakuma H
    • Organizer
      日本生物物理学会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Single-molecule fluorescence imaging of translationally-coupled chaperone action2013

    • Author(s)
      Niwa T, Tadakuma H, Ito K, Ueda T, Taguchi H
    • Organizer
      日本生物物理学会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Construction and functional analysis of DNA origami base DNA-RNAP hybrid nanomachine2013

    • Author(s)
      Masubuchi T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      CBI学会
    • Place of Presentation
      タワーホール船堀(東京都)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ナノ反応場デザインによるDNA-モーター蛋白質ハイブリッドの自律運動設計に向けて2013

    • Author(s)
      多田隈 尚史
    • Organizer
      「細胞を創る」研究会6.0
    • Place of Presentation
      慶応大学・鶴岡キャンパス
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] DNAナノ構造を用いたDNA-RNAポリメラーゼ・ハイブリッドナノマシンの構築と機能評価2012

    • Author(s)
      Masubuchi T, Tadakuma E Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      日本生物物理学界
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Year and Date
      2012-09-24
    • Related Report
      2012 Annual Research Report
  • [Presentation] Catalytic activity of MsbA reconstituted in nanodisc particles is modulated by remote interactions with the bilayer2012

    • Author(s)
      Kavai T, Caaveiro J, Katagiri T, Tadakuma H, Ueda T, Tsumoto K
    • Organizer
      日本生物物理学界
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Year and Date
      2012-09-24
    • Related Report
      2012 Annual Research Report
  • [Presentation] 多分子キネシン間の協調性は運搬物を効率的に長距離輸送するのに重要である2012

    • Author(s)
      Miyazono Y, Endo M, Ueda T, Sugiyama H, Harada Y, Tadakuma H
    • Organizer
      日本生物物理学界
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Year and Date
      2012-09-22
    • Related Report
      2012 Annual Research Report
  • [Presentation] Single molecule imaging of the trans-translation entry process via anchoring of the tagged ribosome2012

    • Author(s)
      Zhou ZP, Yao C, Shimizu Y, Tadakuma H, Taguchi H, Ito K, Ueda T
    • Organizer
      日本RNA学界
    • Place of Presentation
      東北大学百周年記念会館 川内萩ホール(宮城県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Construct ion and functional analysis of DNA origami base DNA-RNAP hybrid nanomachine2012

    • Author(s)
      Masubuch i T, Tadakuma H, Endo M, Sugiyama H, Harada Y, Ueda T
    • Organizer
      Kanazawa Bio-AFM Workshop
    • Place of Presentation
      Kanazawa, Japan(KKR Hotel Kanazawa)
    • Related Report
      2012 Annual Research Report
  • [Book] 1分子生物学 12-1章 「細胞質と細胞核内でのmRNAの運動」2014

    • Author(s)
      多田隈尚史
    • Total Pages
      8
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Book] 化学 vol. 68(6)2013

    • Author(s)
      多田隈尚史、上田卓也
    • Total Pages
      2
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2019-07-29  

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