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Molecular understanding of acid soil tolerance based on genome-wide association study.

Research Project

Project/Area Number 24688009
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Plant nutrition/Soil science
Research InstitutionGifu University

Principal Investigator

Kobayashi Yuriko  岐阜大学, 応用生物科学部, 助教 (40610952)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2015: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2014: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2013: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2012: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Keywordsアルミニウム耐性 / プロトン耐性 / 酸性土壌耐性 / ゲノムワイド関連解析 / 遺伝子多型 / ナチュラルバリエーション / シロイヌナズナ / AtALMT1 / Aluminum tolerance / GWAS / Natural variation / Arabidopsis / root growth / proton tolerance / Al tolerance / low pH tolerance / acid soil / natural variation / アルミニウムストレス / 酸ストレス / SNP / ポリジーン系 / SNP
Outline of Final Research Achievements

In the acid soil of world arable land, mainly Aluminum and proton inhibit the crop growth of crop. In the present study, we conducted genome-wide association study (GWAS) for Al- and proton stress tolerance using approximately 200,000 SNPs among 200 Arabidopsis accessions. In the results, we detected over 100 gene regions which explain approximately 70% of variation in both Al- and proton-tolerance, and then we identified novel genes associated with the Al tolerance. In addition, we revealed that some polymorphisms in the promoter region of AtALMT1 gene are involved in the Al tolerance.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (23 results)

All 2016 2015 2014 2013 2012

All Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Acknowledgement Compliant: 1 results) Presentation (17 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Joint genetic and network analyses identify loci associated with root growth under NaCl stress in Arabidopsis thaliana.,2016

    • Author(s)
      Yuriko Kobayashi, Lingaraj Sahoo, Hiroyuki Koyama et al.
    • Journal Title

      Plant & Cell Environment

      Volume: 39 Issue: 4 Pages: 918-934

    • DOI

      10.1111/pce.12691

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] STOP2 Activates Transcription of Several Genes for Al- and Low pH-Tolerance that Are Regulated by STOP1 in Arabidopsis.2014

    • Author(s)
      Kobayashi Y, Ohyama Y, Kobayashi Y, Ito H, Iuchi S, Fujita M, Zhao CR, Tanveer T, Ganesan M, Kobayashi M, Koyama H.
    • Journal Title

      Mol Plant.

      Volume: 7 Issue: 2 Pages: 311-322

    • DOI

      10.1093/mp/sst116

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of the complex regulation of AtALMT1 expression in response to phytohormones and other inducers.2013

    • Author(s)
      Kobayashi, Y. Kobayashi, Y., Sugimoto, M., Lakshmanan, V., Iuchi, S., Kobayashi, M., Bais, H and Koyama, H.
    • Journal Title

      Plant Physiology

      Volume: 162 Issue: 2 Pages: 732-740

    • DOI

      10.1104/pp.113.218065

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of AtSTOP1 orthologous genes in tobacco and other plant species.2013

    • Author(s)
      Ohyama, Y., Ito, H., Kobayashi, Y., Ikka, T., Morita, A., Kobayashi, M., Imaizumi, R., Aoki, T., Komatsu, K., Sakata, Y., Iuchi, S. & Koyama, H.
    • Journal Title

      Plant Physiol.

      Volume: 162 Issue: 4 Pages: 1937-1946

    • DOI

      10.1104/pp.113.218958

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of AtALMT1 in the Arabidopsis thaliana ecotype Columbia results in enhanced Al-activated malate excretion and beneficial bacterium recruitment.2013

    • Author(s)
      Kobayashi, Y., Lakshmanan, V., Kobayashi, Y., Asai, M., Iuchi, S., Kobayashi, M., Bais, H. P. & Koyama H.
    • Journal Title

      Plant Signaling & Behavior

      Volume: 8 Issue: 9 Pages: e25565-e25565

    • DOI

      10.4161/psb.25565

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular and physiological analysis of Al3+ and H+ rhizotoxicities at moderately acidic conditions.2013

    • Author(s)
      Kobayashi, Y., Kobayashi, Y., Watanabe, T., Shaff J. E., Ohta, H., Kochian, L. V., Wagatsuma, T., Kinraide, T. B. & Koyama
    • Journal Title

      Plant Physiol

      Volume: 163 Issue: 1 Pages: 180-92

    • DOI

      10.1104/pp.113.222893

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] A genome-wide association study of Aluminum tolerance in Arabidopsis thaliana2015

    • Author(s)
      Yuriko Kobayashi, Yuki Nakano, Kazutaka Kusunoki, Satoshi Iuchi, Yoshiharu Y. Yamamoto, Masatomo Kobayashi, Hiroyuki Koyama
    • Organizer
      9th International Symposium on Plant-Soil Interactions at Low pH
    • Place of Presentation
      クロアチア ドゥブロヴニク
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] シロイヌナズナにおけるアルミニウム及び低pH耐性のゲノムワイド関連解析2014

    • Author(s)
      中野友貴, 大橋聖, 楠和隆, 時澤睦朋, 山本義治, 井内聖, 小林正智, 小山博之, 小林佑理子
    • Organizer
      日本土壌肥料学会2014年度東京大会
    • Place of Presentation
      東京農工大学
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] シロイヌナズナにおけるアルミニウムストレスによる根伸長阻害のナチュラルバリエーションの解析2014

    • Author(s)
      中野友貴, 大橋聖, 楠和隆, 時澤睦朋, 山本義治, 井内聖, 小林正智, 小山博之, 小林佑理子
    • Organizer
      第41回根研究集会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2014-09-06 – 2014-09-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] STOP2はSTOP1転写因子制御下にあるAlと低pH耐性関連遺伝子の転写を活性化する2014

    • Author(s)
      小林佑理子、大山慶直、小林安文、伊藤弘樹、井内聖、藤田美紀、趙成日、Tanveer Tazib, Ganesan Markkandan, 小林正智、小山博之
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] 細胞膜表面をターゲットとしたシロイヌナズナのアルミニウムストレスの解析2014

    • Author(s)
      小林安文、小林佑理子、渡部敏裕、我妻忠雄、Kinraide Thomas B. 小山博之
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] シロイヌナズナにおけるアルミニウム及び低pH耐性のゲノムワイド関連解析2014

    • Author(s)
      中野友貴、大橋聖、山中啓史、井内聖、小林正智、山本義治、小山博之、小林佑理子
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] シロイヌナズナリンゴ酸トランスポーターALMT1遺伝子のアルミニウム応答の解析2014

    • Author(s)
      時澤睦朋、小林安文、斎藤竜典、小林佑理子、井内聖、小林正智、野元美佳、多田安臣、山本義治、小山博之
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] シロイヌナズナのアルミニウム耐性のゲノムワイド関連解析2013

    • Author(s)
      山中啓史
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山大学
    • Year and Date
      2013-03-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] シロイヌナズナ野生株集団を用いたゲノムワイド関連解析による環境ストレス耐性機構の理解2013

    • Author(s)
      小林佑理子
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山大学(招待講演)
    • Year and Date
      2013-03-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] STOP1遺伝子発現抑制タバコ組換え体の解析2013

    • Author(s)
      伊藤弘樹、大山慶直、小林佑理子、小林正智、井内聖、小山博之
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] シロイヌナズナリンゴ酸トランスポーターAtALMT1遺伝子の各種シグナル分子に対する発現解析2013

    • Author(s)
      小林安文、小林佑理子、杉本美貴、Lakshmanan V, 井内聖、小林正智、 Bais HP, 小山博之
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Genome wide association study for salt tolerance in Arabidopsis2013

    • Author(s)
      Ayan Sadhukhan, Yuriko Kobayashi, Alex Lipka, Michael Gore, Owen Hoekenga, Satoshi Iuchi, Masatomo Kobayashi, Hiroyuki Koyama
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] アルミニウム応答性リンゴ酸トランスポーターALMT1遺伝子の転写制御機構の解析2013

    • Author(s)
      時澤睦朋、小林安文、小林佑理子、山本義治、小山博之
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] シロイヌナズナアルミ耐性のナチュラルバリエーション2013

    • Author(s)
      大橋聖、中野友貴、小林佑理子、山本義治、井内聖、小林正智、小山博之
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゲノムワイド関連解析によるミネラルストレス耐性の理解2012

    • Author(s)
      小林佑理子
    • Organizer
      中部土壌肥料研究会例会
    • Place of Presentation
      じゅうろくプラザ(岐阜県)(招待講演)
    • Year and Date
      2012-11-08
    • Related Report
      2012 Annual Research Report
  • [Presentation] シロイヌナズナにおけるアルミニウム耐性のゲノムワイド関連解析2012

    • Author(s)
      山中啓史
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      鳥取大学
    • Year and Date
      2012-09-04
    • Related Report
      2012 Annual Research Report
  • [Presentation] ゲノムワイド関連解析から見るミネラルストレス耐性の多様性2012

    • Author(s)
      小林佑理子
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      鳥取大学(招待講演)
    • Year and Date
      2012-09-04
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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