Integrated analysis of Exome-seq and RNA-seq for genetic diseases
| Project/Area Number |
24689044
|
|---|
| Research Category |
Grant-in-Aid for Young Scientists (A)
|
| Allocation Type | Partial Multi-year Fund |
|---|
| Research Field |
Pediatrics
|
|---|
| Research Institution | Saitama Medical University |
|---|
Principal Investigator |
|
|---|
| Project Period (FY) |
2012-04-01 – 2014-03-31
|
| Project Status |
Completed (Fiscal Year 2013)
|
| Budget Amount *help |
¥26,390,000 (Direct Cost: ¥20,300,000、Indirect Cost: ¥6,090,000)
Fiscal Year 2013: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2012: ¥20,020,000 (Direct Cost: ¥15,400,000、Indirect Cost: ¥4,620,000)
|
|---|
| Keywords | 遺伝医学 / バイオインフォマティクス / 高速シーケンサー / ミトコンドリア / 疾患遺伝子 / Exome / RNA-seq / NGS |
|---|
| Research Abstract |
In this study, we have developed RNA and DNA integrated analysis for unresolved genetic disease patients. At first, we constructed and tested cDNA-based exome capture libraries for better variant calling on RNA sequence data. Then, we identified 290 candidate genes for allele-specific gene expression. There were 23 known imprinted genes. In addition, like MRPL43 or ERAP2, several known allele-specific expressed genes were also detected. Finally, to examine the possibility of f contributing to the development of the disease, we conducted to screen heterozygous harmful variants of these candidate genes in clinical samples.
|
Report
(3 results)
Research Products
(5 results)
