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Fast Manipulation Algorithms for Large Interval Data Set

Research Project

Project/Area Number 24700130
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Intelligent informatics
Research InstitutionKobe University

Principal Investigator

Saitoh Toshiki  神戸大学, 工学(系)研究科(研究院), 助教 (00590390)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsアルゴリズム / 幾何データ / ZDD / 区間データ / データ構造 / 区間グラフ / 独立集合問題 / 支配集合問題 / バイオインフォマティクス / 列挙
Outline of Final Research Achievements

In this research, we developed algorithms for geometric data and graphs, and proposed efficient enumeration algorithms by using ZDDs. For geometric graphs, we obtained new knowledge for extended graph classes of interval graphs, and developed algorithms for partial extension problems and space efficient algorithms on intervals. We also presented efficient algorithms using ZDD for actual problems, for example, enumeration of phylogenies and evacuation assignments, and solving puzzles. These results were published in refereed international journals, refereed international conferences, and domestic workshops.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (34 results)

All 2016 2015 2014 2013 2012 Other

All Int'l Joint Research (4 results) Journal Article (10 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 10 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (18 results) (of which Int'l Joint Research: 2 results) Book (2 results)

  • [Int'l Joint Research] University of British Columbia/Simon Fraser University(カナダ)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] MIT(米国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] University of Wurzburg/Karlsruhe Institute of Technology(ドイツ)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] CharlesUniversity/University of West Bohemia(チェコ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Extending partial representations of proper and unit interval graphs2016

    • Author(s)
      Pavel Klavik, Jan Kratochvil, Yota Otachi, Ignaz Rutter, Toshiki Saitoh, Maria Saumell, and Tomas Vyskocil
    • Journal Title

      Algorithmica

      Volume: to appear Issue: 4 Pages: 1071-1104

    • DOI

      10.1007/s00453-016-0133-z

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ferrers Dimension of Grid Intersection Graphs2016

    • Author(s)
      Steven Chaplick, Pavol Hell, Yota Otachi, Toshiki Saitoh, and Ryuhei Uehara
    • Journal Title

      Discrete Applied Mathematics

      Volume: to appear Pages: 130-135

    • DOI

      10.1016/j.dam.2015.05.035

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Swapping Labeled Tokens on Graphs2015

    • Author(s)
      Katsuhisa Yamanaka, Erik D. Demaine, Takehiro Ito, Jun Kawahara, Masashi Kiyomi, Yoshio Okamoto, Toshiki Saitoh, Akira Suzuki, Kei Uchizawa, Takeaki Uno
    • Journal Title

      Theoretical Computer Science

      Volume: 印刷中 Pages: 81-94

    • DOI

      10.1016/j.tcs.2015.01.052

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Extending partial representations of subclasses of chordal graphs2015

    • Author(s)
      Pavel Klavik, Jan Kratochvil, Yota Otachi, and Toshiki Saitoh
    • Journal Title

      Theoretical Computer Science

      Volume: 576 Pages: 85-101

    • DOI

      10.1016/j.tcs.2015.02.007

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Approximating the path-distance-width for AT-free graphs and graphs in related classes2013

    • Author(s)
      Yota Otachi, Toshiki Saitoh, Katsuhisa Yamanaka, Shuji Kijima, Yoshio Okamoto, Hirotaka Ono, Yushi Uno, and Koichi Yamazaki
    • Journal Title

      Discrete Applied Mathematics

      Volume: -- Pages: 69-77

    • DOI

      10.1016/j.dam.2012.11.015

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] The complexity of the stamp folding problem2013

    • Author(s)
      Takuya Umesato, Toshiki Saitoh, Ryuhei Uehara, Hiro Ito, and Yoshio Okamoto
    • Journal Title

      Theoretical Computer Science

      Volume: -- Pages: 13-19

    • DOI

      10.1016/j.tcs.2012.08.006

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Reconstruction Algorithms for Permutation Graphs and Distance-hereditary Graphs2013

    • Author(s)
      Masashi Kiyomi, Toshiki Saitoh, and Ryuhei Uehara
    • Journal Title

      IEICE Transactions on Information and Systems

      Volume: Vol.E96-D, No.3 Pages: 426-432

    • NAID

      110007995584

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Subgraph Isomorphism in Graph Classes2012

    • Author(s)
      Shuji Kijima, Yota Otachi, Toshiki Saitoh, and Takeaki Uno
    • Journal Title

      Discrete Mathematics

      Volume: vol. 312, issue 21 Issue: 21 Pages: 3164-3173

    • DOI

      10.1016/j.disc.2012.07.010

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Bipartite Permutation Graphs are Reconstructible2012

    • Author(s)
      Masashi Kiyomi, Toshiki Saitoh, and Ryuhei Uehara
    • Journal Title

      Discrete Mathematics, Algorithms and Applications

      Volume: 4(3) Issue: 03 Pages: 1-14

    • DOI

      10.1142/s1793830912500395

    • NAID

      120005316240

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Finding All Solutions and Instances of Numberlink and Slitherlink by ZDDs2012

    • Author(s)
      Ryo Yoshinaka, Toshiki Saitoh, Jun Kawahara, Koji Tsuruma, Hiroaki Iwashita, and Shin-ichi Minato
    • Journal Title

      Algorithms

      Volume: vol. 5, No. 2 Issue: 2 Pages: 176-213

    • DOI

      10.3390/a5020176

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] フロンティア法による「Ls in L」と「Sphinxes in Sphinx」の解の列挙2016

    • Author(s)
      兼本 樹, 斎藤 寿樹
    • Organizer
      組合せゲーム・パズル研究集会
    • Place of Presentation
      電気通信大学(東京都・調布市)
    • Year and Date
      2016-03-07
    • Related Report
      2015 Annual Research Report
  • [Presentation] 手数が少ない場合におけるグリッド上のボロノイゲームの解析2016

    • Author(s)
      杉本 晃弘,斎藤 寿樹,山口 一章,増田 澄男
    • Organizer
      組合せゲーム・パズル研究集会
    • Place of Presentation
      電気通信大学(東京都・調布市)
    • Year and Date
      2016-03-07
    • Related Report
      2015 Annual Research Report
  • [Presentation] Space Efficient and Output Sensitive Greedy Algorithms on Intervals2015

    • Author(s)
      Toshiki Saitoh, Takashi Horiyama, David Kirkpatrick, Yota Otachi, Ryuhei Uehara, Yushi Uno, Katsuhisa Yamanaka
    • Organizer
      アルゴリズム研究会
    • Place of Presentation
      九大西新プラザ(福岡県・福岡市)
    • Year and Date
      2015-09-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] Swapping Colored Tokens on Graphs2015

    • Author(s)
      Katsuhisa Yamanaka, Takashi Horiyama, David Kirkpatrick, Yota Otachi, Toshiki Saitoh, Ryuhei Uehara and Yushi Uno
    • Organizer
      The 14th Workshop on Algorithms and Data Structure (WADS 2015)
    • Place of Presentation
      Victoria, Canada
    • Year and Date
      2015-08-05 – 2015-08-07
    • Related Report
      2014 Research-status Report
  • [Presentation] Competitive Diffusion on Weighted Graphs2015

    • Author(s)
      Takehiro Ito, Yota Otachi, Toshiki Saitoh, Hisayuki Satoh, Akira Suzuki, Kei Uchizawa, Ryuhei Uehara, Katsuhisa Yamanaka and Xiao Zhou
    • Organizer
      The 14th Workshop on Algorithms and Data Structure (WADS 2015)
    • Place of Presentation
      Victoria, Canada
    • Year and Date
      2015-08-05 – 2015-08-07
    • Related Report
      2014 Research-status Report
  • [Presentation] Swapping Colored Tokens on Graphs2015

    • Author(s)
      Katsuhisa Yamanaka, Takashi Horiyama, David Kirkpatrick, Yota Otachi, Toshiki Saitoh, Ryuhei Uehara and Yushi Uno
    • Organizer
      The 14th Workshop on Algorithms and Data Structure (WADS 2015)
    • Place of Presentation
      University of Victoria(Victoria・Canada)
    • Year and Date
      2015-08-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Competitive Diffusion on Weighted Graphs2015

    • Author(s)
      Takehiro Ito, Yota Otachi, Toshiki Saitoh, Hisayuki Satoh, Akira Suzuki, Kei Uchizawa, Ryuhei Uehara, Katsuhisa Yamanaka and Xiao Zhou
    • Organizer
      The 14th Workshop on Algorithms and Data Structure (WADS 2015)
    • Place of Presentation
      University of Victoria(Victoria・Canada)
    • Year and Date
      2015-08-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Exact Algorithms for B-Bandwidth Problem with Restricted B2014

    • Author(s)
      Hiroshi Yukumoto, Toshiki Saitoh, Kazuaki Yamaguchi, and Sumio Masuda
    • Organizer
      KOREA-JAPAN Joint Workshop on Algorithms and Computation (WAAC 2014)
    • Place of Presentation
      Okinawa, Japan
    • Year and Date
      2014-07-13 – 2014-07-15
    • Related Report
      2014 Research-status Report
  • [Presentation] Extending Partial Representations of Proper and Unit Interval Graphs2014

    • Author(s)
      Pavel Klavík, Jan Kratochivíl, Yota Otachi, Ignaz Rutter, Toshiki Saitoh, Maria Saumell, and Tomáš Vyskočil
    • Organizer
      The 14th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2014)
    • Place of Presentation
      Copenhagen, Denmark
    • Year and Date
      2014-07-02 – 2014-07-04
    • Related Report
      2014 Research-status Report
  • [Presentation] Swapping Labeled Tokens on Graphs2014

    • Author(s)
      atsuhisa Yamanaka, Erik D. Demaine, Takehiro Ito, Jun Kawahara, Masashi Kiyomi, Yoshio Okamoto, Toshiki Saitoh, Akira Suzuki, Kei Uchizawa, and Takeaki Uno
    • Organizer
      The 7th International Conference on Fun with Algorithms (FUN 2014)
    • Place of Presentation
      Sicily, Italy
    • Year and Date
      2014-07-01 – 2014-07-03
    • Related Report
      2014 Research-status Report
  • [Presentation] Intersection Dimension of Bipartite Graphs2014

    • Author(s)
      Steven Chaplick, Pavol Hell, Yota Otachi, Toshiki Saitoh, and Ryuhei Uehara
    • Organizer
      The 11th Annual Conference on Theory and Applications of Models of Computation (TAMC 2014)
    • Place of Presentation
      Chennai, India
    • Year and Date
      2014-04-11 – 2014-04-13
    • Related Report
      2014 Research-status Report
  • [Presentation] 都市における避難所割当ての列挙と評価手法の研究2014

    • Author(s)
      中野 浩太郎,斎藤 寿樹,加藤 直樹,瀧澤 重志
    • Organizer
      情報処理学会全国大会
    • Place of Presentation
      東京電機大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 都市における避難所割当ての列挙と評価2014

    • Author(s)
      中野 浩太郎, 斎藤 寿樹, 瀧澤 重志, 加藤 直樹
    • Organizer
      日本オペレーションズリサーチ学会 2014年春季研究発表会
    • Place of Presentation
      大阪大学
    • Related Report
      2013 Research-status Report
  • [Presentation] ZDDを用いたExact Cover問題に対するパレート最適な解の列挙2014

    • Author(s)
      松永 涼,斎藤 寿樹,近藤 広樹,中野 浩太郎
    • Organizer
      アルゴリズム研究会
    • Place of Presentation
      中央大学
    • Related Report
      2013 Research-status Report
  • [Presentation] あみだくじを数え上げる省領域アルゴリズムについて2014

    • Author(s)
      中嶋 章裕,斎藤 寿樹,山口 一章,増田 澄男
    • Organizer
      組合せゲーム・パズルミニ研究集会
    • Place of Presentation
      北陸先端科学技術大学院大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 動的計画法を用いた有向二値完全系統樹の効率のよい列挙2014

    • Author(s)
      森戸 一貴, 斎藤 寿樹, 山口 一章, 増田 澄男
    • Organizer
      コンピュテーション研究会
    • Place of Presentation
      小樽商科大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 動的計画法を用いた上界計算法による最大重みクリーク抽出アルゴリズムの提案2013

    • Author(s)
      清水 悟司, 山口 一章, 斎藤 寿樹, 増田 澄男
    • Organizer
      電子情報通信学会 コンピュテーション研究会
    • Place of Presentation
      岐阜大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 不完全データと矛盾しない有向二値完全系統樹を列挙する効率的手法2012

    • Author(s)
      清見 礼, 岡本 吉央, 斎藤 寿樹
    • Organizer
      電子情報通信学会 コンピュテーション研究会
    • Place of Presentation
      北海道大学
    • Related Report
      2012 Research-status Report
  • [Book] 超高速グラフ列挙アルゴリズム-〈フカシギの数え方〉が拓く,組合せ問題への新アプローチ-2015

    • Author(s)
      湊 真一(編), ERATO湊離散構造処理系プロジェクト(著)(2章5章分担執筆)
    • Total Pages
      177
    • Publisher
      森北出版
    • Related Report
      2015 Annual Research Report
  • [Book] 超高速グラフ列挙アルゴリズム-〈フカシギの数え方〉が 拓く,組合せ問題への新アプローチ-2015

    • Author(s)
      湊 真一, ERATO湊離散構造処理系プロジェクト(斎藤含む)
    • Total Pages
      192
    • Publisher
      森北出版
    • Related Report
      2014 Research-status Report

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Published: 2013-05-31   Modified: 2022-02-01  

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