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Development of high-throughput screening system using autoantibody phage library for finding novel diagnostic biomarker of gastric cancer

Research Project

Project/Area Number 24701015
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Tumor diagnosis
Research Institution独立行政法人医薬基盤研究所

Principal Investigator

MURAOKA SATOSHI  独立行政法人医薬基盤研究所, 創薬基盤研究部, 研究員 (50582681)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords抗体ファージ
Research Abstract

We report on high-throughput screening system using autoantibody phage library for finding novel diagnostic biomarker of gastric cancer. The antibody phage library was constructed from peripheral blood lymphocytes from gastric cancer patients using polymerase chain reaction. We panned the constructed library with scirrhous gastric cancer and disease-free control serum to make a sublibrary of antibodies that bind proteins differentially expressed, structurally changed, and post-translationally modified. To confirm this, we examined the binding ability of enriched antibody phage using ELISA. The results indicated that they were binding against gastric cancer serum. In the future, we will perform to isolate antibody phage clone specific to gastric cancer serum.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (20 results)

All 2014 2013 2012 Other

All Journal Article (6 results) (of which Peer Reviewed: 2 results) Presentation (11 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Identification of Missing Proteins in the neXtProt Database and Unregistered Phosphopeptides in the PhosphoSitePlus Database As Part of the Chromosome-Centric Human Proteome Project2013

    • Author(s)
      Takashi Shiromizu, Jun Adachi, Shio Watanabe, Tatsuo Murakami, Takahisa Kuga, Satoshi Muraoka, and Takeshi Tomonaga
    • Journal Title

      J. Proteome Res.

      Volume: 12 (6) (Peer-Reviewed) Pages: 2414-21

    • Related Report
      2013 Final Research Report
  • [Journal Article] In-depth Membrane Proteomic Study of Breast Cancer Tissues for the Generation of a Chromosome-based Protein List2013

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Jun Adachi, Takashi Shiromizu, Shio Watanabe, Takeshi Masuda, Yasushi Ishihama, and Takeshi Tomonaga
    • Journal Title

      J. Proteome Res.

      Volume: 12 (1) (Peer-Reviewed)

    • Related Report
      2013 Final Research Report
  • [Journal Article] A Strategy for Large-Scale Phosphoproteomics and SRM-Based Validation of Human Breast Cancer T issue Samples2012

    • Author(s)
      Ryohei Narumi, Tatsuo Murakami, Takahisa Kuga, Jun Adachi, Takashi Shiromizu, Satoshi Muraoka, Hideaki Kume, Yoshio Kodera, Masaki Matsumoto, Keiichi Nakayama, Yasuhide Miyamoto, Makoto Ishitobi, Hideo Inaji, Kikuya Kato, and Takeshi Tomonaga
    • Journal Title

      J. Proteome Res.

      Volume: 11 (11) (Peer-Reviewed)

    • Related Report
      2013 Final Research Report
  • [Journal Article] Strategy for SRM-based Verification of Biomarker Candidates Discovered by iTRAQ Method in Limited Breast Cancer Tissue Samples2012

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Shio Watanabe, Masayoshi Kuwano, Misako Sato, Naoko Kawasaki, Jun Adachi, Makoto Ishitobi, Hideo Inaji, Yoshio Kodera, Yasuhide Miyamoto, Kikuya Kato, Takeshi Tomonaga
    • Journal Title

      J Proteome Res.

      Volume: 11 (8) (Peer-Reviewed) Pages: 4201-10

    • Related Report
      2013 Final Research Report
  • [Journal Article] In-depth Membrane Proteomic Study of Breast Cancer Tissues for the Generation of a Chromosome-based Protein List2012

    • Author(s)
      Muraoka S, Kume H, Adachi J, Shiromizu T, Watanabe S, Masuda T, Ishihama Y, Tomonaga T
    • Journal Title

      J Proteome Res

      Volume: 12(1) Issue: 1 Pages: 208-13

    • DOI

      10.1021/pr300824m

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Strategy for SRM-based verification of biomarker candidates discovered by iTRAQ method in limited breast cancer tissue samples.2012

    • Author(s)
      Muraoka S, Kume H, Watanabe S, Adachi J, Kuwano M, Sato M, Kawasaki N, Kodera Y, Ishitobi M, Inaji H, Miyamoto Y, Kato K, Tomonaga T.
    • Journal Title

      J Proteome Res.

      Volume: 11 Issue: 8 Pages: 4201-4210

    • DOI

      10.1021/pr300322q

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 抗体ファージライブラリを用いた胃癌の診断バイオマーカーの探索と抗体医薬への応用2014

    • Author(s)
      村岡賢
    • Organizer
      招聘セミナー
    • Place of Presentation
      国立がんセンター、東京
    • Year and Date
      2014-01-24
    • Related Report
      2013 Final Research Report
  • [Presentation] Development of High-throughput Screening System Using Autoantibody Library for Discovery of Scirrhous Gastric Cancer Biomarker. Human Proteome Organization (HUPO)2013

    • Author(s)
      Muraoka S, Kume H, Saitoh H, Enomoto Y, Ito Y, Nishizuka S, Wakabayashi G, Hoshino I, Matsubara H, and Tomonaga T
    • Organizer
      12th Annual World Congress
    • Place of Presentation
      Yokohama Japan
    • Related Report
      2013 Final Research Report
  • [Presentation] 自己抗体ファージライブラリを用いたスキルス胃癌の診断バイオマーカーの探索2013

    • Author(s)
      村岡賢、久米秀明、西塚哲、若林剛、星野敢、松原久裕、朝長毅
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 乳がん膜タンパク質の大規模iTRAQ-ショットガン解析とSRM/MRM解析によるバイオマーカータンパク質の探索と検証2013

    • Author(s)
      村岡賢、久米秀明、渡邊史生、桑野晶喜、足立淳、佐藤三佐子、川﨑直子、石濱泰、石飛真人、稲治英生、小寺義男、宮本泰豪、加藤菊也、朝長毅
    • Organizer
      がん若手ワークショップ
    • Place of Presentation
      長野
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Development of High-throughput Screening System Using Autoantibody Library for Discovery of Scirrhous Gastric Cancer Biomarker2013

    • Author(s)
      Muraoka S, Kume H, Saitoh H, Enomoto Y, Ito Y, Nishizuka S, Wakabayashi G, Hoshino I, Matsubara H, and Tomonaga T
    • Organizer
      Human Proteome Organization (HUPO)
    • Place of Presentation
      yokohama
    • Related Report
      2013 Annual Research Report
  • [Presentation] A strategy for SRM-based systematic validation of biomarker candidates discovered by iTRAQ method in breast cancer tissue samples2012

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Shio Watanabe, Masayoshi Kuwano, Misako Sato, Naoko Kawasaki, Jun Adachi, Makoto Ishitobi, Hideo Inaji, Yasuhide Miyamoto, Kikuya Kato, Yoshio Kodera, Takeshi Tomonaga
    • Organizer
      HUPO 11th Annual World Congress
    • Related Report
      2013 Final Research Report
  • [Presentation] A strategy for SRM-based large-scale validation of biomarker candidates discovered by iTRAQ method in limited breast cancer tissue samples2012

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Shio Watanabe, Masayoshi Kuwano, Misako Sato, Naoko Kawasaki, Jun Adachi, Makoto Ishitobi, Hideo Inaji, Yasuhide Miyamoto, Kikuya Kato, Yoshio Kodera, Takeshi Tomonaga
    • Organizer
      Asia Oceania Human proteome organization 6^<th> Congress
    • Place of Presentation
      Beijing China
    • Related Report
      2013 Final Research Report
  • [Presentation] A strategy for validation of biomarker candidates combining iTRAQ and SRM/MRM assay in breast cancer tissue samples2012

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Jun Adachi, Yasuhide Miyamoto, Kikuya Kato, Yoshio Kodera, Takeshi Tomonaga
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      札幌
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] 乳癌膜タンパク質の大規模iTRAQ-shotgunとSRM解析によるバイオマーカータンパク質の検証2012

    • Author(s)
      村岡賢、久米秀明、渡邊史生、桑野晶喜、足立淳、佐藤三佐子、川﨑直子、石濱泰、石飛真人、稲治英生、小寺義男、宮本泰豪、加藤菊也、朝長毅
    • Organizer
      日本プロテオーム学会2012年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] A strategy for SRM-based systematic validation of biomarker candidates discovered by iTRAQ method in breast cancer tissue samples2012

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Misako Sato, Jun Adachi, Makoto Ishitobi, Hideo Inaji, Yasuhide Miyamoto, Kikuya Kato, Yoshio Kodera, Takeshi Tomonaga
    • Organizer
      HUPO 11th Annual World Congress
    • Place of Presentation
      Boston
    • Related Report
      2012 Research-status Report
  • [Presentation] A strategy for SRM-based large-scale validation of biomarker candidates discovered by iTRAQ method in limited breast cancer tissue samples2012

    • Author(s)
      Satoshi Muraoka, Hideaki Kume, Misako Sato, Jun Adachi, Makoto Ishitobi, Hideo Inaji, Yasuhide Miyamoto, Kikuya Kato, Yoshio Kodera, Takeshi Tomonaga
    • Organizer
      Asia Oceania Human proteome organization 6th Congress
    • Place of Presentation
      Beijing
    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.nibio.go.jp/proteome/index.html

    • Related Report
      2013 Final Research Report
  • [Patent(Industrial Property Rights)] 乳がん患者手術治療後の予後判定方法2012

    • Inventor(s)
      朝長毅、村 岡賢、村上達夫、加藤菊 也、宮本泰豪
    • Industrial Property Rights Holder
      朝長毅、村 岡賢、村上達夫、加藤菊 也、宮本泰豪
    • Filing Date
      2012-05-23
    • Related Report
      2013 Final Research Report
  • [Patent(Industrial Property Rights)] 乳がん患者手術治療後の予後判定方法2012

    • Inventor(s)
      朝長 毅、村岡 賢、村上 達夫、加藤 菊也、宮本 泰豪
    • Industrial Property Rights Holder
      朝長 毅、村岡 賢、村上 達夫、加藤 菊也、宮本 泰豪
    • Industrial Property Rights Type
      特許
    • Filing Date
      2012-05-23
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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