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Genomic and physiological characterization of dehalorespiring bacteria in three phyla

Research Project

Project/Area Number 24710077
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Environmental technology/Environmental materials
Research InstitutionNagoya Institute of Technology (2013)
Toyohashi University of Technology (2012)

Principal Investigator

YOSHIDA Naoko  名古屋工業大学, 工学(系)研究科(研究院), 助教 (10432220)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2012: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords脱ハロゲン化呼吸細菌 / バイオレメディエーション / ジオバクター / デハロバクター / デハロコッコイデス / 還元的脱塩素化 / Geobacter / Dehalobacter / 脱塩素化呼吸 / 還元的脱ハロゲン化
Research Abstract

Dehalorespiring bacteria grow by respiration using organohalides as electron acceptors and reductively dehalogenate organohalides to less halogenated compounds. I have also enriched and isolated phylogenetically and functionally different dehalorespiring bacteria of the three phyla from various environmental samples. Among them, Geobacter sp. AY showed unprecedented high dechlorination activity that detoxify 1,2-dichloroethane (1,2-DCA) of 1,000 ppm to ethene within a week. Geobacter sp. AY had following advantages to be applied in bioremediation; the high activity for high concentration of 1,2-DCA, culturability using only acetate as sole electron donor and carbon source, and the high activity in the culture grown without any organohalides. The genome analysis revealed the constitutive expression was probably resulted from a plasmid lacking of cAMP kinase transcriptional regulator transferred from obligate dehalorespiring Dehalobacter.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (16 results)

All 2014 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Invited: 5 results)

  • [Journal Article] Aquatic plant surface 1 as a niche for methanotrophs2014

    • Author(s)
      N Yoshida, H Iguchi, H Yurimoto, A Murakami, Y Sakai
    • Journal Title

      Frontiers in microbiology

      Volume: 5

    • Related Report
      2013 Final Research Report
  • [Journal Article] Anaerobic 4-chlorophenol mineralization in an enriched culture under iron-reducing conditions2014

    • Author(s)
      Li, D Suzuki, C Zhang, N Yoshida, S Yang, A Katayama
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: (accepted)

    • NAID

      110009894837

    • Related Report
      2013 Final Research Report
  • [Journal Article] Aquatic plant surface as a niche for methanotrophs.2014

    • Author(s)
      Yoshida N, Iguchi H, Yurimoto H, Murakami A, Sakai Y
    • Journal Title

      Frontiers in Microbiology / Terrestrial Microbiology

      Volume: 5 Pages: 1-8

    • DOI

      10.3389/fmicb.2014.00030

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Anaerobic 4-chlorophenol mineralization in an enriched culture under iron-reducing conditions2014

    • Author(s)
      Zhiling Li, Daisuke Suzuki, Chunfang Zhang, Suyin Yang, Naoko Yoshida, and Arata Katayama
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: (in press) Issue: 5 Pages: 529-532

    • DOI

      10.1016/j.jbiosc.2014.04.007

    • NAID

      110009894837

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of Dehalobacter strains in the anaerobic dechlorination of 2,4,6-trichlorophenol2013

    • Author(s)
      Z Li, D Suzuki, C Zhang, N Yoshida, S Yang, A Katayama
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 116 Pages: 602-609

    • NAID

      110009685212

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Journal Article] A humin-dependent Dehalobacter species is involved in reductive debromination of Tetrabromobisphenol A2013

    • Author(s)
      C Zhang, Z Li, D Suzuki, L Ye, N Yoshida, A Katayama
    • Journal Title

      Chemosphere

      Volume: 92 Pages: 1343-8

    • Related Report
      2013 Final Research Report
  • [Journal Article] A humin-dependent Dehalobacter species is involved in reductive debromination of tetrabromobisphenol A2013

    • Author(s)
      Chunfang Zhang, Zhiling Li, Daisuke Suzuki, Lizhen Ye, Naoko Yoshidaaoko, and Arata Katayama
    • Journal Title

      Chemosphere

      Volume: 92 Issue: 10 Pages: 1343-1348

    • DOI

      10.1016/j.chemosphere.2013.05.051

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of biodegradable plastics as solid hydrogen donors for the reductive dechlorination of fthalide by Dehalobacter species2012

    • Author(s)
      N Yoshida, L Ye, F Liu, L Zhiling, A Katayama
    • Journal Title

      Bioresource Technology

      Volume: 130 Pages: 478-485

    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Journal Article] Simulation of the Reductive Dechlorination Processes in a Lab-Scale Anaerobic Biobarrier with the Enriched TCP Dechlorination Consortium2012

    • Author(s)
      Zhiling Li, Yasushi Inoue, Takuya Mizoguchi, Yohei Simizu, Naoko Y oshida andArata Katayama
    • Journal Title

      Transactions of Tianjin University

      Volume: 18 Issue: 6 Pages: 441-449

    • DOI

      10.1007/s12209-012-1768-8

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Physiological and genomic differences of dehalorespiring bacteria in three different phyla2013

    • Author(s)
      Naoko Yoshida
    • Organizer
      The 5th Taiwan-Korea-Japan International Symposium on Microbial Ecology
    • Place of Presentation
      National Central University, Taiwan
    • Year and Date
      2013-11-01
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Invited
  • [Presentation] Enrichment of new candidate PCB dechlorinator, Dehalobacter sp. FTH1 and the physiological and genomic characterization2013

    • Author(s)
      Naoko Yoshida
    • Organizer
      Jade Mountain Forum on Sustainable Environment
    • Place of Presentation
      National Cheng Kung University , Taiwan
    • Year and Date
      2013-04-23
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 細菌によるハロゲン化メチルの代謝2012

    • Author(s)
      吉田奈央子,井町寛之,片山新太,由里本博也,阪井康能
    • Organizer
      第216回生存圏シンポジウム植物と微生物大気中のC1化合物を介した気候変動
    • Year and Date
      2012-12-04
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 多様な芳香族塩素化合物を脱塩素化するDehalobacter sp. FTH1株のドラフトゲノム解析に基づく脱ハロゲン化酵素遺伝子解析2012

    • Author(s)
      吉田奈央子、Hauke Smidt、片山新太
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Year and Date
      2012-06-25
    • Related Report
      2013 Final Research Report
  • [Presentation] 多様な芳香族塩素化合物を脱塩素化するDehalobacter sp. FTH1株の ドラフトゲノム解析に基づく脱ハロゲン化酵素遺伝子解析

    • Author(s)
      吉田奈央子、Hauke Smidt、片山新太
    • Organizer
      環境バイオテクノロジー学会 2013年度大会
    • Place of Presentation
      京都大学 おうばくプラザ
    • Related Report
      2012 Research-status Report
  • [Presentation] Enrichment of new candidate PCB dechlorinator, Dehalobacter sp. FTH1 and the physiological and genomic characterization.

    • Author(s)
      Naoko Yoshida
    • Organizer
      Jade Mountain Forum on Sustainable Environment
    • Place of Presentation
      National Cheng Kung University , Taiwan
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 細菌によるハロゲン化メチルの代謝

    • Author(s)
      吉田 奈央子, 井町 寛之, 片山 新太, 由里本 博也, 阪井 康能
    • Organizer
      第216回 生存圏シンポジウム 植物と微生物 大気中のC1化合物を介した気候変
    • Place of Presentation
      京都大学生存圏研究所
    • Related Report
      2012 Research-status Report
    • Invited

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Published: 2013-05-31   Modified: 2019-07-29  

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