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Epigenome regulation by chromatin insulators

Research Project

Project/Area Number 24710217
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Genome biology
Research InstitutionKumamoto University

Principal Investigator

ISHIHARA Ko  熊本大学, 大学院先導機構, 准教授 (90398230)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsクロマチンインスレーター / 転写 / クロマチン高次構造 / CTCF / HOX遺伝子 / ゲノム編集 / エピゲノム / CTCF / クロマチンループ / ジンクフィンガーヌクレアーゼ
Outline of Final Research Achievements

Chromatin insulators partition the genome into functional units to control cell type- and developmental stage-specific gene expression. The CCCTC-binding factor (CTCF) is an insulator-binding protein that functions in transcriptional regulation and higher-order chromatin formation. CTCF is enriched at several tens of thousands of sites on the human genome. However, only a part of the sites can function as insulators in cell type- and developmental stage-specific manner. In this study, to know the role of insulators at the human HOXA gene locus, we generated insulator-targeted cells by genome editing with engineered ZFNs. Our results showed that insulator is responsible for higher-order chromatin formation and proper gene expression. Additionally, we characterized a candidate for a novel transcriptional factor that binds to the functional insulator site in the human HOXA gene locus.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (4 results)

All 2014 2012 Other

All Presentation (2 results) Remarks (2 results)

  • [Presentation] レチノイン酸受容体によるクロマチン高次構造変換を介したHOX遺伝子制御2014

    • Author(s)
      石原 宏
    • Organizer
      第8回日本エピジェネティクス研究会年回
    • Place of Presentation
      伊藤国際学術研究センター(東京都文京区)
    • Year and Date
      2014-05-25 – 2014-05-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ジンクフィンガーヌクレアーゼを用いたHOXA遺伝子領域のインスレーター欠損細胞の作製と解析2012

    • Author(s)
      石原宏
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター(東京都)
    • Related Report
      2012 Research-status Report
  • [Remarks] 大学院先導機構

    • URL

      http://sendou.kuma-u.jp/research/index.html

    • Related Report
      2013 Research-status Report
  • [Remarks] 熊本大学大学院先導機構

    • URL

      http://sendou.kuma-u.jp/research/index.html

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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