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Distribution and function of D-amino acid and amino acid racemase in animals

Research Project

Project/Area Number 24770068
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Animal physiology/Animal behavior
Research InstitutionKochi University

Principal Investigator

Uda Kouji  高知大学, 自然科学系, 講師 (10448392)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsD-アミノ酸 / アミノ酸ラセマーゼ / d-アミノ酸 / ラセマーゼ
Outline of Final Research Achievements

Free D-amino acids are widely distributed in living organisms, from bacteria to mammals, and play a key role in specific physiological functions. In invertebrates, D-Ser, D-Asp, D-Ala and D-Arg have been found in various phyla species, and play important physiological roles. In contrast to the wide distribution of D-amino acids, amino acid racemase genes have been identified in few invertebrate species. We searched the nucleotide, EST, and SRA databases, and found 11 serine racemase homologous genes from eight invertebrate phyla species. The cloned genes were identified based on their maximum activity as serine racemase (SerR) and aspartate racemase (AspR). Our results revealed that SerR and AspR are more widely distributed among invertebrates than previously thought.

Report

(4 results)
  • 2015 Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Acknowledgement Compliant: 1 results) Presentation (5 results)

  • [Journal Article] Phosphagen kinase in Schistosoma japonicum: II. Determination of amino acid residues essential for substrate catalysis using site-directed mutagenesis.2014

    • Author(s)
      Tokuhiro S, Nagataki M, Jarilla BR, Uda K, Suzuki T, Sugiura T, Agatsuma T.
    • Journal Title

      Mol Biochem Parasitol.

      Volume: 194 Issue: 1-2 Pages: 56-63

    • DOI

      10.1016/j.molbiopara.2014.04.010

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two arginine kinases of Tetrahymena pyriformis: characterization and localization.2014

    • Author(s)
      Michibata, J., Okazaki, N., Motomura, S., Uda, K., Fujiwara, S. and Suzuki, T.
    • Journal Title

      Comp. Biochem. Physiol. Part B.

      Volume: 171 Pages: 34-41

    • DOI

      10.1016/j.cbpb.2014.03.008

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The role of Y84 on domain 1 and Y87 on domain 2 of Paragonimus westermani taurocyamine kinase: Insights on the substrate binding mechanism of a trematode phosphagen kinase.2013

    • Author(s)
      Jarilla BR, Tokuhiro S, Nagataki M, Uda K, Suzuki T, Acosta LP, Agatsuma T.
    • Journal Title

      Exp Parasitol.

      Volume: 135 Issue: 4 Pages: 695-700

    • DOI

      10.1016/j.exppara.2013.10.008

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Gene structure of the two-domain taurocyamine kinase from Paragonimus westermani: Evidence for a distinct lineage of trematode phosphagen kinases2013

    • Author(s)
      Jarilla B R, Tokuhiro S, Nagataki M, Uda K, Suzuki T, Acosta L P, Agatsuma T.
    • Journal Title

      FEBS Letters

      Volume: 567 Issue: 14 Pages: 2278-2283

    • DOI

      10.1016/j.febslet.2013.05.061

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Complete mitochondrial genomes of the Japanese pink coral (Corallium elatius) and the Mediterranean red coral (Corallium rubrum): A reevaluation of the phylogeny of the family Coralliidae based on molecular data2013

    • Author(s)
      Uda K, Komeda Y, Fujita T, Iwasaki N, Bavestrello G, Giovine M, Cattaneo-Vietti R, Suzuki T.
    • Journal Title

      Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

      Volume: 8 Issue: 3 Pages: 209-219

    • DOI

      10.1016/j.cbd.2013.05.003

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Phosphagen kinase in Schistosoma japonicum: Characterization of its enzymatic properties and determination of its gene structure.2013

    • Author(s)
      Tokuhiro S, Uda K, Yano H, Nagataki M, Jarilla BR, Suzuki T, Agatsuma T.
    • Journal Title

      Mol Biochem Parasitol.

      Volume: 188 Issue: 2 Pages: 91-98

    • DOI

      10.1016/j.molbiopara.2013.04.001

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization and origin of bacterial arginine kinases.2013

    • Author(s)
      Suzuki, T., Soga, S., Inoue, M. and Uda, K
    • Journal Title

      Int. J. Biol. Macromol.

      Volume: 57 Pages: 273-277

    • DOI

      10.1016/j.ijbiomac.2013.02.023

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] A diverse array of creatine kinase and arginine kinase isoform genes is present in the starlet sea anemone Nematostella vectensis, a cnidarian model system for studying developmental evolution.2012

    • Author(s)
      Uda K., Ellington WR, Suzuki T
    • Journal Title

      Gene.

      Volume: 497 Issue: 2 Pages: 214-227

    • DOI

      10.1016/j.gene.2012.01.036

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] ISOLATION AND CHARACTERIZATION OF THE AMINO ACID RACEMASE GENES FROM SEVERAL INVERTEBRATE SPECIES2014

    • Author(s)
      Koji UDA, Keita ABE, Yoko DEHARA, Kiriko MIZOBATA, Natsumi SOGAWA, Yuki AKAGI
    • Organizer
      The 2nd International Conference of D-Amino Acid Research
    • Place of Presentation
      栃木県総合文化センター
    • Year and Date
      2014-09-02 – 2014-09-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] ウシエビに存在するアミノ酸ラセマーゼ遺伝子の単離と機能解析2014

    • Author(s)
      安部啓太,宇田幸司
    • Organizer
      中国四国地区生物系三学会合同大会
    • Place of Presentation
      岡山理科大学
    • Year and Date
      2014-05-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] プラナリア・アスパラギン酸ラセマーゼ遺伝子の 単離と機能解析

    • Author(s)
      宇田幸司,出原陽子,安部啓太,西願麻以,曽川菜摘,赤木勇貴,溝端 キリコ,山城由也
    • Organizer
      日本動物学会第84回大会
    • Place of Presentation
      岡山大学津島キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] テトラヒメナに存在するセリンラセマーゼの酵素機能解析

    • Author(s)
      山城由也,西願麻以,鈴木知彦,宇田幸司
    • Organizer
      中国四国地区生物系三学会合同大会(徳島大会)
    • Place of Presentation
      徳島大学常三島キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] テトラヒメナに存在する セリンラセマーゼホモログの酵素機能解析

    • Author(s)
      山城由也,西願麻以,鈴木知彦,宇田幸司
    • Organizer
      日本動物学会第83回大会
    • Place of Presentation
      大阪大学(大阪府)
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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