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Super-resolution, multicolor imaging of chromatin structures in the interphase nucleus

Research Project

Project/Area Number 24770113
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionNational Institute of Information and Communications Technology

Principal Investigator

MATSUDA Atsushi  独立行政法人情報通信研究機構, 未来ICT研究所バイオICT研究室, 研究員 (20585723)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2012: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsクロマチン / 高分解能顕微鏡観察 / 超分解能顕微鏡
Research Abstract

Fission yeast has been a classical model organism for gene silencing. However, little is known about its chromatin structure due to the small size of the genome. Here we used super-resolution fluorescence microscopy to observe condensation levels of interphase chromatin in fission yeast. Unexpectedly silent chromatin is less condensed than the rest of euchromatin in fission yeast. Furthermore, the subtelomeric silent regions are flanked by highly condensed, but non-silencing chromatin body, which we named as knob. The regions of knob span for about 50 kb devoid of methylated histones. Knob condensation was independent from HP1 homolog swi6. The unusual chromatin structure indicates that gene silencing in fission yeast is not a direct consequence of chromatin condensation.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (35 results)

All 2014 2013 2012 Other

All Journal Article (4 results) (of which Peer Reviewed: 1 results) Presentation (27 results) (of which Invited: 9 results) Remarks (4 results)

  • [Journal Article] 超高分解蛍光顕微鏡法2014

    • Author(s)
      松田厚志、平野泰弘、原口徳子
    • Journal Title

      光アライアンス

      Volume: 2014年3月号 Pages: 31-35

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Journal Article] Autophagosomes form at ER.mitochondria contact sites2013

    • Author(s)
      Hamasaki M, Furuta N, Matsuda A, Nezu A, Yamamoto A, Fujita N, Oomori H, Noda T, Haraguchi T, Hiraoka Y, Amano A, Yoshimori T
    • Journal Title

      Nature

      Volume: 495 Issue: 7441 Pages: 389-93

    • DOI

      10.1038/nature11910

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 内構造観察のための超分解能蛍光イメージング技術2012

    • Author(s)
      松田厚志、平野泰弘、平岡泰
    • Journal Title

      細胞工学

      Volume: Vol 31 Pages: 863-869

    • Related Report
      2013 Final Research Report
  • [Journal Article] 核内構造観察のための超分解能蛍光イメージング技術2012

    • Author(s)
      1. 松田厚志、平野泰弘、平岡泰
    • Journal Title

      細胞工学

      Volume: 31 Pages: 863-869

    • Related Report
      2012 Research-status Report
  • [Presentation] 分裂酵母減数分裂期前期染色体構造の3D-SIM解析2014

    • Author(s)
      丁大橋、松田厚志、原口徳子、平岡泰
    • Organizer
      「ゲノムを支える非コードDNA領域の機能」公開シンポジウムインターメアによる染色体制御機構
    • Place of Presentation
      東京大学山上会館、東京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母減数分裂期前期染色体構造の3D-SIM解析2014

    • Author(s)
      丁大橋、松田厚志、原口徳子、平岡泰
    • Organizer
      「ゲノムを支える非コードDNA領域の機能」公開シンポジウム
    • Place of Presentation
      東京大学山上会館、東京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] 超分解能顕微鏡3DSIMにより見るクロマチン構造2013

    • Author(s)
      松田厚志
    • Organizer
      広島大学セミナー
    • Place of Presentation
      広島大学、広島県広島市
    • Year and Date
      2013-09-17
    • Related Report
      2013 Final Research Report
  • [Presentation] 高分解能顕微鏡2013

    • Author(s)
      松田厚志
    • Organizer
      第21回細胞生物学ワークショップ
    • Place of Presentation
      未来ICT研究所、兵庫県神戸市
    • Year and Date
      2013-08-08
    • Related Report
      2013 Final Research Report
  • [Presentation] デノイジング2013

    • Author(s)
      松田厚志
    • Organizer
      第21回細胞生物学ワークショップ
    • Place of Presentation
      未来ICT研究所、兵庫県神戸市
    • Year and Date
      2013-08-07
    • Related Report
      2013 Final Research Report
  • [Presentation] Fine structures of meiosis-specific chromosome and homologous chromosome pairing in S. pombe2013

    • Author(s)
      Da-Qiao Ding, Atsushi Matsuda, Tokuko Haraguchi, Yasushi Hiraoka
    • Organizer
      Pombe 2013 (7th International Fission Yeast Meeting)
    • Place of Presentation
      University of London, London, UK
    • Year and Date
      2013-06-29
    • Related Report
      2013 Final Research Report
  • [Presentation] The Reconstruction process of structured illumination microscopy2013

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Superresolution Microscopy Workshop - Seeing Biology at the Nanoscale
    • Place of Presentation
      IMB, Biopolice, Singapore, Singapore
    • Year and Date
      2013-06-19
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Practical Localization microscopy on noisy biological samples2013

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Superresolution Microscopy Workshop - Seeing Biology at the Nanoscale
    • Place of Presentation
      IMB, Biopolice, Singapore, Singapore
    • Year and Date
      2013-06-18
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 分裂酵母減数分裂期前期染色体構造の3D-SIM解析2013

    • Author(s)
      丁大橋、松田厚志、原口徳子、平岡泰
    • Organizer
      第31回染色体ワークショップ ・ 第12回核ダイナミクス研究会
    • Place of Presentation
      ホテルおかだ、神奈川県足柄下郡
    • Related Report
      2013 Final Research Report
  • [Presentation] Trouble shooting 3DSIM in the Fourier space Structured Illumination2013

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Biomedical Applications and Future Developments meeting
    • Place of Presentation
      Wellcome Trust offices, London, United Kingdom
    • Related Report
      2013 Final Research Report
  • [Presentation] Super-resolution microscopic measurements of chromatin compaction in fission yeast reveal uncoupling of condensed chromatin from silent loci2013

    • Author(s)
      Atsushi Matsuda, Hiroshi Kimura, Tokuko Haraguchi, Yasushi Hiraoka
    • Organizer
      EMBO Nuclear Structure and Dynamics meeting
    • Place of Presentation
      L'Isle-sur-la-Sorgue, France
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母減数分裂期前期染色体構造の3D-SIM解析2013

    • Author(s)
      丁大橋、松田厚志、原口徳子、平岡泰
    • Organizer
      第31回染色体ワークショップ・第12回核ダイナミクス研究会
    • Place of Presentation
      ホテルおかだ、神奈川県足柄下郡
    • Related Report
      2013 Annual Research Report
  • [Presentation] Trouble shooting 3DSIM in the Fourier space2013

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Structured Illumination: Biomedical Applications and Future Developments meeting
    • Place of Presentation
      Wellcome Trust offices, London,United Kingdom
    • Related Report
      2013 Annual Research Report
  • [Presentation] Super-resolution microscopic measurements of chromatin compaction in fission yeast reveal uncoupling of condensed chromatin from silent loci2013

    • Author(s)
      Atsushi Matsuda, Hiroshi Kimura, Tokuko Haraguchi, Yasushi Hiraoka
    • Organizer
      EMBO Nuclear Structure and Dynamics meeting
    • Place of Presentation
      The Domaine de Mousquety, L'Isle-sur-la-Sorgue, France
    • Related Report
      2013 Annual Research Report
  • [Presentation] 超分解能顕微鏡3DSIMにより見るクロマチン構造2013

    • Author(s)
      松田厚志
    • Organizer
      広島大学セミナー
    • Place of Presentation
      広島大学、広島県
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 高分解能顕微鏡2013

    • Author(s)
      松田厚志
    • Organizer
      第21回細胞生物学ワークショップ
    • Place of Presentation
      未来ICT研究所、神戸市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Fine structures of meiosis-specific chromosome and homologous chromosome pairing in S. pombe2013

    • Author(s)
      Da-Qiao Ding, Atsushi Matsuda, Tokuko Haraguchi, Yasushi Hiraoka
    • Organizer
      Pombe 2013
    • Place of Presentation
      University of London, UK
    • Related Report
      2013 Annual Research Report
  • [Presentation] The Reconstruction process of structured illumination microscopy2013

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Superresolution Microscopy Workshop - Seeing Biology at the Nanoscale
    • Place of Presentation
      IMB, Biopolice, Singapore
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Practical Localization microscopy on noisy biological samples2013

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Superresolution Microscopy Workshop - Seeing Biology at the Nanoscale
    • Place of Presentation
      IMB, Biopolice, Singapore
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 分裂酵母の間期核クロマチンの凝縮率2012

    • Author(s)
      松田厚志、木村宏、平岡泰、原口徳子
    • Organizer
      第30回染色体ワークショップ・第11回核ダイナミクス研究会
    • Place of Presentation
      兵庫県立淡路夢舞台国際会議場、兵庫県淡路市
    • Year and Date
      2012-12-21
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母減数分裂期染色体構造の相同染色体対合における役割2012

    • Author(s)
      丁大橋、松田厚志、原口徳子、平岡泰
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡、福岡県福岡市
    • Year and Date
      2012-12-13
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Deep STORM2012

    • Author(s)
      松田厚志
    • Organizer
      第4回「光塾」
    • Place of Presentation
      北海道大学、北海道札幌市
    • Year and Date
      2012-08-26
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Live and precise 3D registration of multicolor 3D structured illumination microscopy unveils higher-order structural organization of fission yeast chromatin2012

    • Author(s)
      Atsushi Matsuda, Yasushi Hiraoka, Tokuko Haraguchi
    • Organizer
      Focus on Microscopy 2012
    • Place of Presentation
      SUNTEC Singapore International Convention & Exhibition Centre, Singapore, Singapore
    • Year and Date
      2012-04-02
    • Related Report
      2013 Final Research Report
  • [Presentation] Deep STORM2012

    • Author(s)
      松田厚志
    • Organizer
      第4回「光塾」
    • Place of Presentation
      北海道大学、北海道
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 分裂酵母減数分裂期染色体構造の相同染色体対合における役割2012

    • Author(s)
      丁大橋、松田厚志、原口徳子、平岡泰
    • Organizer
      第35回 日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡、福岡県
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 分裂酵母の間期核クロマチンの凝縮率2012

    • Author(s)
      松田厚志、木村宏、平岡泰、原口徳子
    • Organizer
      第30 回 染色体ワークショップ・第 11 回 核ダイナミクス研究会
    • Place of Presentation
      兵庫県立 淡路夢舞台国際会議場、兵庫県
    • Related Report
      2012 Research-status Report
  • [Presentation] Live and precise 3D registration of multicolor 3D structured illumination microscopy unveils higher-order structural organization of fission yeast chromatin2012

    • Author(s)
      Atsushi Matsuda, Yasushi Hiraoka, Tokuko Haraguchi
    • Organizer
      Focus on Microscopy
    • Place of Presentation
      Suntec, Singapore
    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www2.nict.go.jp/advanced_ict/bio/w131103/CellMagic/

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/hiraoka/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 情報通信研究機構・未来ICT研究所・バイオICT研究室ホームページ

    • URL

      http://www2.nict.go.jp/advanced_ict/bio/w131103/CellMagic/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 大阪大学生命機能研究科核ダイナミクス研究室ホームページ

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/hiraoka/index.html

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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