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Structural analysis of the supramolecular complexes involved in DNA replication

Research Project

Project/Area Number 24770157
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biophysics
Research InstitutionNational Institute of Genetics

Principal Investigator

HIZUME Kohji  国立遺伝学研究所, 細胞遺伝研究系, 助教 (10378846)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsDNA replication / nucleosome / atomic force microscopy / DNA複製 / ヌクレオソーム / 原子間力顕微鏡 / クロマチン
Outline of Final Research Achievements

To complete correctly the replication of the genomic DNA, the initiation of DNA replication is highly regulated by the sequential association of protein complexes on replication origin.
In this study, we assembled these protein complexes on the DNA in vitro and formed relatively huge supramolecular complexes. Both molecular imaging using atomic force microscopy (AFM) and biochemical assays show that nucleosome formation on the DNA containing specific sequence of origin induces stable association of ORC on origin. We also found that nucleosome positioning around origin is rearranged by the addition of ORC.
we also performed observation of MCM-DNA complex by AFM and detected that MCM complex bound to more than two DNA strands was detected, which formed DNA-loop. This result suggests existence of the mechanism of that MCM interacts with higher-order structure of DNA such as DNA-loop rather than that MCM is simply loaded on DNA besides ORC.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (9 results)

All 2014 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (6 results)

  • [Journal Article] Concerted interaction between origin recognition complex (ORC), nucleosomes, and replication origin DNA ensures stable ORC-origin binding2013

    • Author(s)
      Hizume, K., Yagura, M. and Araki, H.
    • Journal Title

      Genes Cells

      Volume: 18 Issue: 9 Pages: 764-779

    • DOI

      10.1111/gtc.12073

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Lamin B receptor recognizes specific modifications of histone H4 in heterochromatin formation2012

    • Author(s)
      Hirano Y, Hizume K, Kimura H, Takeyasu K, Haraguchi T, Hiraoka Y
    • Journal Title

      J. Biol. Chem

      Volume: 287 Issue: 51 Pages: 42654-42663

    • DOI

      10.1074/jbc.m112.397950

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Core histone charge and linker histone H1 effects on the chromatin structure of Schizosaccharomyces pombe.2012

    • Author(s)
      Prieto, E., Hizume, K., Kobori, T., Yoshimura, S.H., and Takeyasu, K.
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 76 Pages: 2261-2266

    • NAID

      40019531146

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] MCM-DNA複合体の原子間力顕微鏡による可視化解析2014

    • Author(s)
      日詰光治、荒木弘之
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜市(パシフィコ横浜)
    • Year and Date
      2014-11-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleosome on helicase activity of CMG complex2014

    • Author(s)
      Hizume K, Yagura M, Endo S, Araki H
    • Organizer
      the 9th 3R Symposium
    • Place of Presentation
      御殿場市(御殿場高原ホテル)
    • Year and Date
      2014-11-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA REPLICATION LICENSING ON THE CHROMATIN FIBER: VISUALIZATION BY ATOMIC FORCE MICROSCOPY

    • Author(s)
      Hizume K, Yagura M, Araki H
    • Organizer
      "Eukaryotic DNA Replication & Genome Maintenance" at Cold Spring Harbor Laboratory
    • Place of Presentation
      New York, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] ORC の複製開始点特異的な結合に寄与する、ORC/nucleosome/複製開始点DNA 間の協調的相互作用

    • Author(s)
      日詰光治、矢倉勝、荒木弘之
    • Organizer
      第22回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report
  • [Presentation] クロマチンファイバー上でのDNA複製のライセンシング:原子間力顕微鏡による可視化解析

    • Author(s)
      日詰光治、矢倉勝、荒木弘之
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸市
    • Related Report
      2013 Research-status Report
  • [Presentation] 真核生物DNA複製の開始制御における、クロマチン上への複製開始因子集合の観察

    • Author(s)
      日詰光治、矢倉勝、荒木弘之
    • Organizer
      日本顕微鏡学会 走査型プローブ顕微鏡分科会 平成25年度研究会(バイオ系SPM研究会)
    • Place of Presentation
      新潟県南魚沼郡湯沢町
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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