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Development of measurement technology for molecular dynamics in intracellular nanospace

Research Project

Project/Area Number 24770160
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biophysics
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

ICHIMURA Taro  独立行政法人理化学研究所, 生命システム研究センター, 研究員 (50600748)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2013: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2012: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Keywords1分子計測・操作 / 一分子計測・操作 / 国際情報交流
Outline of Final Research Achievements

Measurement of molecular dynamics inside living cells is one of important approaches for understanding the complex system of cells. Fluorescence correlation spectroscopy have been widely used to measure some quantities related to molecular dynamics, including diffusion constant, concentration, and reaction rate. In this study, I have developed a novel methodology to realize fluorescence correlation spectroscopy with high resolution beyond the diffraction limit of light. By using transition process between radiative and non-radiative states of photoswitchable fluorescent molecules, a high spatial resolution around 100 nm has been achieved beyond the diffraction limit, which is corresponding to ten times smaller focal volume than conventional fluorescence correlation spectroscopy. This method can also be used for super resolution imaging, it has a potential for wide application in the future biology study.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (26 results)

All 2014 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 1 results) Presentation (16 results) (of which Invited: 6 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Visualizing cell state transition using Raman spectroscopy2014

    • Author(s)
      Taro Ichimura, Liang-da Chiu, Katsumasa Fujita, Satoshi Kawata, Tomonobu M. Watanabe, Toshio Yanagida, and Hideaki Fujita
    • Journal Title

      Plos ONE

      Volume: 9 Issue: 1 Pages: e84478-e84478

    • DOI

      10.1371/journal.pone.0084478

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Culturing of mouse and human cells on soft substrates promote the expression of stem cell markers2014

    • Author(s)
      Sayaka Higuchi, Tomonobu M. Watanabe, Keiko Kawauchi, Taro Ichimura, Hideaki Fujita
    • Journal Title

      J Biosci Bioeng

      Volume: 117 Issue: 6 Pages: 749-75

    • DOI

      10.1016/j.jbiosc.2013.11.011

    • NAID

      110009823162

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tip-enhanced nano-Raman analytical imaging of locally induced strain distribution in carbon nanotubes2013

    • Author(s)
      Taka-aki Yano, Taro Ichimura, Shota Kuwahara, Fekhra H’Dhili, Kazumasa Uetsuki, Yoshito Okuno, Prabhat Verma, and Satoshi Kawata
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 2592-2592

    • DOI

      10.1038/ncomms3592

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 生体分子動態のナノイメージング2013

    • Author(s)
      渡邉朋信, 神隆, 市村垂生
    • Journal Title

      光アライアンス

      Volume: 24 Pages: 15-20

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Far-field free tapping-mode tip-enhanced Raman microscopy2012

    • Author(s)
      Jun Yu, Yuika Saito, Taro Ichimura, Satoshi Kawata, Prabhat Verma
    • Journal Title

      Appl. Phys. Lett

      Volume: 102 Issue: 12 Pages: 123110-123110

    • DOI

      10.1063/1.4799496

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Distinct modulated pupil function system for real-time imaging of living cells.2012

    • Author(s)
      Tomonobu M Watanabe et al.
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 9 Pages: e44028-e44028

    • DOI

      10.1371/journal.pone.0044028

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Engineering strain-sensitive yellow fluorescent protein.2012

    • Author(s)
      Taro Ichimura et al.
    • Journal Title

      Chemical Communications

      Volume: 48 Issue: 63 Pages: 7871-7873

    • DOI

      10.1039/c2cc32541a

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Subnanometric stabilization of plasmon-enhanced optical microscopy2012

    • Author(s)
      T. Yano, T. Ichimura, S. Kuwahara, P. Verma, and S. Kawata
    • Journal Title

      Nanotechnology

      Volume: 23 Issue: 20 Pages: 465203-465203

    • DOI

      10.1088/0957-4484/23/20/205503

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Chromatin plasticity as a differentiation index during muscle differentiation of C2C12 myoblasts.2012

    • Author(s)
      Tomonobu M. Watanabe et al.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 418 Issue: 4 Pages: 742-747

    • DOI

      10.1016/j.bbrc.2012.01.091

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Measuring cellular "state" with optical microscopy2014

    • Author(s)
      Taro Ichimura
    • Organizer
      Japan Taiwan Bilateral Conference on Biomedical and Plasmonic Imaging
    • Place of Presentation
      National Taiwan University, Taiwan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Observing and measuring states of living cells with optical microscopy2014

    • Author(s)
      Taro Ichimura
    • Organizer
      1st KANSAI Nanoscience and Nanotechnology International Symposium
    • Place of Presentation
      Toyonaka, Osaka, Japan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Simultaneous tracking of multiple myosin's in sub-diffraction scale based on spectral division2014

    • Author(s)
      Taishi Kakizuka, Taro Ichimura, Hideaki Fujita, and Tomonobu M. Watanabe
    • Organizer
      The 58th Annual Meeting of Biophysical Society
    • Place of Presentation
      San Francisco
    • Related Report
      2013 Annual Research Report
  • [Presentation] Label-free observation of single microtubule by means of SHG microscopy2014

    • Author(s)
      Junichi Kaneshiro, Tomohiro Shima, Yasushi Okada, Taro Ichimura, and Tomonobu M. Watanabe
    • Organizer
      The 58th Annual Meeting of Biophysical Society
    • Place of Presentation
      San Francisco
    • Related Report
      2013 Annual Research Report
  • [Presentation] Evaluating intracellular crowded with a glycine-inserted mutant2014

    • Author(s)
      Takamitsu J. Morikawa , Hiroaki Machiyama, Kazuko Okamoto, Keiko Yoshizawa, Hideaki Fujita, Taro Ichimura, Katsumi Imada, Takaharu Nagai, Toshio Yanagida, and Tomonobu M. Watanabe
    • Organizer
      The 58th Annual Meeting of Biophysical Society
    • Place of Presentation
      San Francisco
    • Related Report
      2013 Annual Research Report
  • [Presentation] システム生物学における分光学的アプローチ2013

    • Author(s)
      市村垂生
    • Organizer
      理研シンポジウム 「最先端光計測とライフサイエンスの近未来 -バイオ・ラマン2017[3]-」
    • Place of Presentation
      愛媛大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 分光超解像ナノメトリー法の開発2013

    • Author(s)
      市村垂生
    • Organizer
      第三回分子モーター討論会
    • Place of Presentation
      東京大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 先端増強ラマン散乱顕微鏡を用いたカーボンナノチューブ内部歪みのナノ分光・イメージング2013

    • Author(s)
      矢野隆章, 市村垂生, 桑原彰太, Fekhra H’Dhili, 奥野義人, Prabhat Verma, 河田聡
    • Organizer
      平成25年度日本分光学会年次講演会
    • Place of Presentation
      大阪大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] 光第二高調波干渉顕微鏡による反転分極構造の観察2013

    • Author(s)
      金城純一, 上江洲由晃, 市村垂生, 渡邉朋信
    • Organizer
      平成25年度日本分光学会年次講演会
    • Place of Presentation
      大阪大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分光ナノメトリーによる複数モーターたんぱく質のナノ動態計測2013

    • Author(s)
      垣塚太志, 市村垂生, 池崎圭吾, 藤田英明, 渡邉朋信
    • Organizer
      平成25年度日本分光学会年次講演会
    • Place of Presentation
      大阪大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Change in the nucleus plasticity during C2C12 differentiation measured by fluorescent microscope2012

    • Author(s)
      Tomonobu M.Watanabe, Taro Ichimura, and Hideaki Fujita
    • Organizer
      The 4th EMBO Meeting Nice 2012
    • Place of Presentation
      Nice Acropolis, France
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] ラマン分光顕微鏡を用いて細胞の分化状態を識別する2012

    • Author(s)
      吉田宗生, 市村垂生, 邱亮達, 藤田克昌, 渡邉朋信, 藤田英明
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] 力を感じて色が変わる蛍光タンパク質の開発2012

    • Author(s)
      市村垂生, 藤田英明, 慶澤景子, 渡邉朋信
    • Organizer
      平成24年度日本分光学会年次講演会
    • Place of Presentation
      東京工業大学 大岡山キャンパス(東京都目黒区)
    • Related Report
      2012 Research-status Report
  • [Presentation] Soft substrates are effective in establishment of iPS cells without preparation of feeder cells2012

    • Author(s)
      樋口清香,渡邉朋信,市村垂生,藤田英明
    • Organizer
      The 45th Annual Meeting of JSDB and The 64th Annual Meeting of JSCB
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2012 Research-status Report
  • [Presentation] 生命システム解明のための光学イメージング技術の開発と応用2012

    • Author(s)
      市村垂生,渡邉朋信
    • Organizer
      第7回NIBBバイオイメージングフォーラム
    • Place of Presentation
      基礎生物学研究所(愛知県岡崎市)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Efficacy of soft substrate in establishment of iPS cells

    • Author(s)
      樋口清香,渡邉朋信,市村垂生,藤田英明
    • Organizer
      Genomic Sciences Research Complex(GSC)七夕ミーティング2012
    • Place of Presentation
      理化学研究所横浜研究所交流棟(神奈川県横浜市)
    • Related Report
      2012 Research-status Report
  • [Patent(Industrial Property Rights)] 光学顕微鏡システム2013

    • Inventor(s)
      市村垂生
    • Industrial Property Rights Holder
      独立行政法人理化学研究所
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013-07-17
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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