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Proteomic analyses of autophagy-related structures in yeast

Research Project

Project/Area Number 24770182
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Cell biology
Research InstitutionTokyo Institute of Technology

Principal Investigator

YAMAMOTO Hayashi  東京工業大学, フロンティア研究機構, 特任助教 (80551283)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2012: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsオートファジー / オートファゴソーム / 出芽酵母 / 膜動態 / 膜小胞 / プロテオーム解析 / ベシクル
Research Abstract

Autophagy is a conserved degradation process, wherein autophagosomes are generated by cooperative actions of multiple autophagy-related (Atg) proteins. Previous studies using yeast Saccharomyces cerevisiae have provided various insights into the molecular basis of autophagy, however, the most intriguing issues in autophagy, namely, the origin of the autophagosomal membranes, remain to be elucidated. In this study, we succeeded to purify the autophagosomal membranes and the Atg9 vesicles, one of the autophagy-related membranes, and subjected them to proteomic analyses. These analyses showed that both the Atg9 vesicles and the autophagosomal membranes contain the TRAPPIII complex and its downstream factor Ypt1. Furthermore, we found that the Atg9 vesicles become part of the autophagosomal membranes, thereby recruiting the TRAPPIII complex and Ypt1 onto the autophagosomal membranes.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (17 results)

All 2014 2013 2012 Other

All Journal Article (11 results) (of which Peer Reviewed: 10 results,  Open Access: 1 results) Presentation (5 results) (of which Invited: 2 results) Remarks (1 results)

  • [Journal Article] Structural basis of starvation-induced assembly of the autophagy initiation complex2014

    • Author(s)
      Yuko Fujioka, Sho W Suzuki, Hayashi Yamamoto, Chika Kondo-Kakuta, Yayoi Kimura, Hisashi Hirano, Rinji Akada, Fuyuhiko Inagaki, Yoshinori Ohsumi, Nobuo N Noda
    • Journal Title

      NATURE STRUCTURAL & MOLECUIAR BIOLOGY

      Volume: 21(発表確定) Issue: 6 Pages: 513-521

    • DOI

      10.1038/nsmb.2822

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Yeast and mammalian autophagosomes exhibit distinct phosphatidylinositol 3-phosphate asymmetries2014

    • Author(s)
      Cheng J, Fujita A, Yamamoto H, Tatematsu T, Kakuta S, Obara K, Ohsumi Y, Fujimoto T.
    • Journal Title

      Nat. Commun.

      Volume: 5 Issue: 1 Pages: 3207-3207

    • DOI

      10.1038/ncomms4207

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Different phosphatidylinositol 3-phosphate asymmetries in yeast and mammalian autophagosomes revealed by a new electron microscopic technique.2014

    • Author(s)
      Fujimoto T., Yamamoto, H., and Ohsumi Y.
    • Journal Title

      Autophagy

      Volume: 10 Pages: 933-935

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Fine mapping of autophagy-related proteins during autophagosome formation in Saccharomyces cerevisiae2013

    • Author(s)
      鈴木邦律他
    • Journal Title

      Journal of Cell Science

      Volume: 126 Pages: 2534-2544

    • DOI

      10.1242/jcs.122960

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Atg9 vesicles recruit vesicle- tethering proteins Trs85 and Ypt1 to the autophagosome formation site2012

    • Author(s)
      Kakuta, S., Yamamoto, H., Negishi, L., Kondo-Kakuta, C., Hayashi, N., and Ohsumi, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: Vol.287 Issue: 53 Pages: 44261-44269

    • DOI

      10.1074/jbc.m112.411454

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7.2012

    • Author(s)
      Yamaguchi M, Matoba K, Sawada R, Fujioka Y, Nakatogawa H, Yamamoto H, Kobashigawa Y, Hoshida H, Akada R, Ohsumi Y, Noda NN, Inagaki F.
    • Journal Title

      Nat. Struct. Mol. Biol.

      Volume: 19 Issue: 12 Pages: 1250-1256

    • DOI

      10.1038/nsmb.2451

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Membrane Protein Rim21 Plays a Central Role in Sensing Ambient pH in Saccharomyces cerevisiae2012

    • Author(s)
      Obara, K.
    • Journal Title

      J. Biol. Chem.

      Volume: 287 Issue: 46 Pages: 38473-38481

    • DOI

      10.1074/jbc.m112.394205

    • NAID

      120005090608

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18.2012

    • Author(s)
      Yasunori Watanabe, Takafumi Kobayashi, Hayashi Yamamoto, Hisashi Hoshida, Rinji Akada, Fuyuhiko Inagaki, Yoshinori Ohsumi, Nobuo N. Noda
    • Journal Title

      Journal of Biological Chemistry

      Volume: 287 Issue: 38 Pages: 31681-31690

    • DOI

      10.1074/jbc.m112.397570

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] The Autophagy-Related Protein Kinase Atg1Interacts with the Ubiquitin-Like ProteinAtg8 via the Atg8 Family Interacting Motif to Facilitate Autophagosome Formation2012

    • Author(s)
      Hitoshi Nakatogawa, Shiran Ohbayashi, Machiko Sakoh-Nakatogawa, Soichiro Kakuta, Sho W. Suzuki, Hiromi Kirisako, Chika Kondo-Kakuta, Nobuo N. Noda, Hayashi Yamamoto, Yoshinori Ohsumi
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 287 Issue: 34 Pages: 28503-28507

    • DOI

      10.1074/jbc.c112.387514

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Atg9 vesicles are an important membrane source during early steps of autophagosome formation.2012

    • Author(s)
      Yamamoto H.
    • Journal Title

      J. Cell Biol.

      Volume: 198(2) Issue: 2 Pages: 219-233

    • DOI

      10.1083/jcb.201202061

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural insights into Atg10-mediated formation of the autophagy-essential Atg12-Atg5 conjugate2012

    • Author(s)
      Yamaguchi, M., Noda, N. N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y. and Inagaki, F
    • Journal Title

      Structure

      Volume: Vol.20 Issue: 7 Pages: 1244-1254

    • DOI

      10.1016/j.str.2012.04.018

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] オートファジー関連タンパク質のリン酸化による機能制御2014

    • Author(s)
      山本 林,鈴木 翔,藤岡 優子,木村 弥生,平野 久,野田 展生,大隅 良典
    • Organizer
      第12回 日本プロテオーム学会年会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Characterization and proteomic analysis of Atg9-containing structures in yeast2012

    • Author(s)
      山本林、大隅良典
    • Organizer
      6th International Symposium on Autophagy
    • Place of Presentation
      沖縄
    • Related Report
      2013 Final Research Report
  • [Presentation] オートファゴソーム形成に関わるAtg9ベシクルの細胞内動態とプロテオーム解析2012

    • Author(s)
      山本林、角田宗一郎、渡邉朋信、北村朗、大隅良典
    • Organizer
      第23回日本生体防御学会学術総会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] Characterization and proteomic analysis of Atg9-containing structures in yeast.2012

    • Author(s)
      Yamamoto, H. and Ohsumi, Y.
    • Organizer
      6th International Symposium on Autophagy
    • Place of Presentation
      Bankoku Shinryokan (Okinawa)
    • Related Report
      2012 Research-status Report
  • [Presentation] オートファゴソーム形成に関わるAtg9ベシクルの細胞内動態とプロテオーム解析2012

    • Author(s)
      山本 林,角田 宗一郎,渡邉 朋信,北村 朗,大隅 良典
    • Organizer
      第23回 日本生体防御学会学術総会
    • Place of Presentation
      品川区総合区民会館(東京)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Remarks]

    • URL

      http://www.ohsumilab.aro.iri.titech.ac.jp

    • Related Report
      2013 Final Research Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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