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Comparative phospho-motif analysis reveals the evolutionary expansion of phosphorylation signaling networks

Research Project

Project/Area Number 24770190
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Cell biology
Research InstitutionKanazawa Medical University

Principal Investigator

YOSHIZAKI Hisayoshi  金沢医科大学, 医学部, 助教 (00443490)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2012: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsリン酸化 / シグナル伝達 / 比較進化解析 / モチーフ解析 / リン酸化シグナル / リン酸化モチーフ / 比較ゲノム解析 / 細胞内情報伝達
Outline of Final Research Achievements

Protein phosphorylation is a post-translational modification that is essential for a wide range of eukaryotic physiological processes. However the physiological roles of most remain unknown. In this study, we developed a method to extract phosphosites with important roles in cellular functions.
We determined 178 phosphomotifs based on the analysis of 34,366 phosphosites. Comparative genomic analyses were performed using genomes from nine species from yeast to humans. Consequently, we identified 16 phosphomotifs, in which the level of conservation increased among species. The highly conserved phosphomotifs in humans and the worm were kinase regulatory sites. The motifs that appeared in the fly were novel phosphomotifs, including zinc finger motifs. The motifs that appeared in fish allowed the detection of the expansion of phosphorylation signaling related to alternative splicing.
Our method can be helpful for extracting novel phosphomotifs with physiological functions.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (8 results)

All 2015 2014 2013

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (6 results)

  • [Journal Article] Large-scale analysis of evolutionary histories of phosphorylation motifs in the human genome.2015

    • Author(s)
      Hisayoshi Yoshizaki and Shujiro Okuda
    • Journal Title

      GigaScience

      Volume: 4 Issue: 1 Pages: 21-21

    • DOI

      10.1186/s13742-015-0057-6

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis.2014

    • Author(s)
      Hisayoshi Yoshizaki and Shujiro Okuda
    • Journal Title

      BMC Genomics

      Volume: 15 Issue: 1 Pages: 546-546

    • DOI

      10.1186/1471-2164-15-546

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Large-scale analysis of the evolutionary history of phosphorylation motifs2014

    • Author(s)
      Shujiro Okuda and Hisayoshi Yoshizaki
    • Organizer
      The 2014 ASCB / IFCB Meeting
    • Place of Presentation
      Philadelphia, Pennsylvania, USA
    • Year and Date
      2014-12-06 – 2014-12-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Comparative phospho-motif analysis reveals the evolutionary expansion of phosphorylation signaling networks.2014

    • Author(s)
      吉崎尚良、奥田修二郎
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] PKNシグナル伝達のリン酸化プロテオーム解析2014

    • Author(s)
      野田 陽平、吉崎 尚良、向井 秀幸、早野 俊哉
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 細胞分裂期におけるPKNの基質の網羅的同定2014

    • Author(s)
      竹林 輝、野田 陽平、吉崎 尚良、向井 秀幸、早野 俊哉
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of protein phosphorylation in the context of evolution.2014

    • Author(s)
      Shujiro Okuda and Hisayoshi Yoshizaki
    • Organizer
      22nd Annual International Conference on Intelligent Systems for Molecular Biology
    • Place of Presentation
      Boston USA
    • Year and Date
      2014-07-11 – 2014-07-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Evolutionary analysis of the phosphorylation signaling reveals functionally conserved motifs2013

    • Author(s)
      吉崎尚良, 奥田修二郎
    • Organizer
      第36回分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市)
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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