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Analyses of molecular mechanisms of regulation of bacterial shape by cytoskeletal protein complex.

Research Project

Project/Area Number 24770191
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Cell biology
Research InstitutionRikkyo University (2013)
National Institute of Genetics (2012)

Principal Investigator

SHIOMI Daisuke  立教大学, 理学部, 准教授 (70507532)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords細胞形態 / 細胞骨格 / 大腸菌 / 抑圧変異体 / 形態形成 / 細胞骨格タンパク質 / ペプチドグリカン / タンパク質間相互作用 / Bacterial two-hybrid
Research Abstract

Purpose of this project was to understand molecular mechanism to regulate bacterial cell shape. Analyses of the suppressor mutants of the rodZ mutant suggested that RodZ regulates assembly of MreB filaments. This result was published in 2012. In order to analyze the importance of the positively-charged residues in the juxta-membrane domain, I introduced Alanine into the residues and deleted the domain. I found that the positively-charged residues is dispensable for the RodZ function while the length of the domain is critical. I also analyzes the interaction among proteins constituting supramolecular machinery, elongasome. I found that RodZ interacts with MreB, MreC, PBP2, and RodA and that there are two sub-complexes in the complex, that is, MreB/MreC and PBP2/RodA complexes. The results indicate that RodZ bridges the sub-complexes. I also applied site-specific in vivo photo crosslink assay to detect interaction between RodZ and other proteins. I could detect crosslinked products.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2013 2012 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (8 results) Book (2 results) Remarks (1 results)

  • [Journal Article] A mutation in the promoter region of zipA, a component of the divisome, suppresses the shape defect of RodZ-deficient cells.2013

    • Author(s)
      Daisuke Shiomi
    • Journal Title

      Microbiologyopen

      Volume: 2 Issue: 5 Pages: 798-810

    • DOI

      10.1002/mbo3.116

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells2013

    • Author(s)
      Shiomi, D
    • Journal Title

      Molecular Microbiology

      Volume: 87 Issue: 5 Pages: 1029-1044

    • DOI

      10.1111/mmi.12148

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 大腸菌形態形成因子複合体内の相互作用から見えるRodZの機能2013

    • Author(s)
      塩見大輔、桑原友里、仁木宏典
    • Organizer
      第10回21世紀大腸菌研究会
    • Place of Presentation
      静岡県修善寺
    • Related Report
      2013 Final Research Report
  • [Presentation] Bacterial shape determinant protein RodZ directly binds to peptidoglycan to regulate the width2013

    • Author(s)
      塩見大輔
    • Organizer
      第86回日本細菌学会
    • Place of Presentation
      千葉県幕張
    • Related Report
      2013 Final Research Report
  • [Presentation] 大腸菌形態制御因子RodZの分裂面への局在とその意義2013

    • Author(s)
      塩見大輔、仁木宏典
    • Organizer
      第7回日本ゲノム微生物学会
    • Place of Presentation
      滋賀県長浜
    • Related Report
      2013 Final Research Report
  • [Presentation] 大腸菌形態形成因子複合体内の相互作用から見えるRodZの機能2013

    • Author(s)
      塩見 大輔
    • Organizer
      第10回 21世紀大腸菌研究会
    • Place of Presentation
      ラフォーレ修善寺(静岡県)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 大腸菌形態制御因子RodZの分裂面への局在とその意義2013

    • Author(s)
      塩見 大輔
    • Organizer
      第7回 日本ゲノム微生物学会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] Bacterial shape determinant protein RodZ directly binds to peptidoglycan to regulate the width.2013

    • Author(s)
      塩見 大輔
    • Organizer
      第86回 日本細菌学会
    • Place of Presentation
      幕張
    • Related Report
      2012 Research-status Report
  • [Presentation] RodZタンパク質の細胞分裂面への局在 : 細胞幅の制御2012

    • Author(s)
      塩見大輔、仁木宏典
    • Organizer
      第9回21世紀大腸菌研究会
    • Place of Presentation
      滋賀県長浜
    • Related Report
      2013 Final Research Report
  • [Presentation] RodZタンパク質の細胞分裂面への局在:細胞幅の制御2012

    • Author(s)
      塩見 大輔
    • Organizer
      第9回 21世紀大腸菌研究会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Book] Escherichia coli and Bacillus subtilis : The Frontiers of Molecular Microbiology Revisited (Sadaie Y and Matsumoto K.) Chapter 3-2. Nucleoid organization and chromosome segregation2012

    • Author(s)
      Daisuke Shiomi, Hironori Niki
    • Publisher
      Research Signpost 2012
    • Related Report
      2013 Final Research Report
  • [Book] Escherichia coli and Bacillus subtilis: The Frontiers of Molecular Microbiology Revisited2012

    • Author(s)
      Yoshito Sadaie and Kouji Matsumoto
    • Total Pages
      362
    • Publisher
      Research Signpost
    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www2.rikkyo.ac.jp/web/dshiomi/CellularFunctionLab/Top.html

    • Related Report
      2013 Final Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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