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Epigenetic regulation of key developmental genes from embryo to adult

Research Project

Project/Area Number 24770202
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionThe University of Tokyo

Principal Investigator

TSUKAHARA Tatsuya  東京大学, 理学(系)研究科(研究院), 助教 (90586413)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsエピジェネティクス / 発生関連遺伝子 / DNAメチル化 / メダカ / 脊椎動物 / developmental gene / key developmental gene / ヒストン / 未分化状態
Research Abstract

We performed the epigenomic analysis of pluripotent blastula embryos and adult myotome and liver in medaka fish. We revealed that, in developmental gene loci, the size of hypomethylated DNA domain (HMD) positively correlates with the repression levels of developmental gene expression in blastula, and HMDs become shortened when the adjacent gene is actively expressed in adult tissues. The comparative analyses with human ES cells, zebrafish embryos and adult muscle showed the conservation of the correlation between HMD size and the repression levels of developmental genes. Therefore, this study highlights the novel features of developmental gene regulation mediated by the size of epigenetic domain from pluripotent embryos to adult.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (9 results)

All 2013 2012 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (8 results) (of which Invited: 2 results)

  • [Journal Article] Large hypomethylated domain serves as strong repressive machinery for key developmental genes in vertebrates

    • Author(s)
      Ryohei Nakamura, Tatsuya Tsukahara, Wei Qu, Kazuki Ichikawa, Takayoshi Otsuka, Katsumi Ogoshi, Taro L Saito, Kouji Matsushima, Sumio Sugano, Shinichi Hashimoto, Yutaka Suzuki, Shinichi Morishita, and Hiroyuki Takeda
    • Journal Title

      Development

      Volume: (in press)(受理済)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] The size of DNA hypomethylated domain reflects repression levels of developmental genes2013

    • Author(s)
      Ryohei Nakamura, Tatsuya Tsukahara, Hiroyuki Takeda
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸(神戸国際展示場・ポートピアホテル、兵庫県)
    • Related Report
      2013 Final Research Report
  • [Presentation] Epigenetic Regulation of Key Developmental Genes in the Medaka Genome2013

    • Author(s)
      Tatsuya Tsukahara
    • Organizer
      Systems Biology Across the Pacific : from Molecules to Ecosystems (UTokyo Forum)
    • Place of Presentation
      サンチアゴ(カトリカ大学、チリ)
    • Related Report
      2013 Final Research Report
  • [Presentation] Antagonistic relationship between H3K27me3 and DNA methylation in long-term regulation of developmental genes2013

    • Author(s)
      Ryohei Nakamura, Taro L Saito, Wei Qu, Jun Yoshimura, Shinichi Morishita, Yutaka Suzuki, Shinichi Hashimoto, Tatsuya Tsukahara and Hiroyuki Takeda
    • Organizer
      CDB symposium 2013
    • Place of Presentation
      神戸(理化学研究所発生・再生科学総合研究センター、兵庫県)
    • Related Report
      2013 Final Research Report
  • [Presentation] Epigenetic Regulation of Key Developmental Genes in the Medaka Genome2013

    • Author(s)
      Tatsuya Tsukahara
    • Organizer
      Systems Biology Across the Pacific: from Molecules to Ecosystems (UTokyo Forum)
    • Place of Presentation
      Santiago, Chile
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] The size of DNA hypomethylated domain reflects repression levels of developmental genes2013

    • Author(s)
      Nakamura Ryohei, Tatsuya Tsukahara, Hiroyuki Takeda
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸(兵庫県)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Antagonistic relationship between H3K27me3 and DNA methylation in long-term regulation of developmental genes2013

    • Author(s)
      Ryohei Nakamura, Taro L Saito, Wei Qu, Jun Yoshimura, Shinichi Morishita, Yutaka Suzuki, Shinichi Hashimoto, Tatsuya Tsukahara, Hiroyuki Takeda
    • Organizer
      CDB symposium 2013
    • Place of Presentation
      神戸(理化学研究所発生再生科学総合研究センター)
    • Related Report
      2012 Research-status Report
  • [Presentation] Antagonistic relationship between H3K27me3 and DNA methylation in long-term regulation of developmental genes2012

    • Author(s)
      Ryohei Nakamura, Taro L Saito, Wei Qu, Jun Yoshimura, Shinichi Morishita, Yutaka Suzuki, Shinichi Hashimoto, Tatsuya Tsukahara and Hiroyuki Takeda
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      福岡(福岡国際会議場・マリンメッセ福岡、福岡県)
    • Related Report
      2013 Final Research Report
  • [Presentation] Antagonistic relationship between H3K27me3 and DNA methylation in long-term regulation of developmental genes2012

    • Author(s)
      Ryohei Nakamura, Taro L Saito, Wei Qu, Jun Yoshimura, Shinichi Morishita, Yutaka Suzuki, Shinichi Hashimoto, Tatsuya Tsukahara, Hiroyuki Takeda
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      福岡(福岡国際会議場・マリンメッセ福岡)
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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