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Robustness mechanisms for gene expression though the paralogous genes

Research Project

Project/Area Number 24770214
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionYamagata University

Principal Investigator

OCHI Haruki  山形大学, 医学部, 助教 (00505787)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsパラログ / 発生制御遺伝子 / Pax2 / Pax5 / ナメクジウオ / ツメガエル / トランスジェニックシステム / 浸透圧ストレス / 遺伝子発現制御 / 遺伝子発現調節 / 転写因子 / 器官形成 / ゲノム進化 / 遺伝子発現 / シス調節配列 / パラログ遺伝子
Outline of Final Research Achievements

Paralogus genes often have redundant functions, while little is known about the evolution of their regulatory interactions. It has been reported that, while pax2 and ancestral-type ortholog pax2/5/8 show constitutive expression in the pronephros and its orthologous tissue in amphioxus respectively, pax5 shows no expression in the pronephros. We found that pax5 gets activated in the pronephros, by either the down-regulation of pax2, or by hypertonic osmotic stress. We identified a pronephric enhancer of pax2, and revealed that its paralogous counterpart in pax5 is involved in both the functional compensation of pax2 and the osmotic stress response. Their ancestral-type enhancer in pax2/5/8 was also active in the normal pronephros but got further activated by the hypertonic osmotic stress. These results suggest that the mechanisms for the functional compensation of pax2 by pax5 evolved from the osmotic stress response mechanism of their ancestral gene.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (44 results)

All 2015 2014 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (38 results) (of which Invited: 8 results) Book (2 results) Remarks (1 results)

  • [Journal Article] ストン脱メチル化因子Jmjd3による眼形成遺伝子Pax6の発現制御2015

    • Author(s)
      川口茜、越智陽城、須藤則広、荻野肇
    • Journal Title

      21世紀の遺伝学(XI)

      Volume: 89 Pages: 8-8

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Transcriptional regulators in the Hippo signaling pathway control organ growth in Xenopus tadpole tail regeneration2014

    • Author(s)
      Hayashi S., Ochi H., Ogino H., Kawasumia A., Kameid Y., Tamura K., Yokoyama H.
    • Journal Title

      Developmental Biology

      Volume: 396 Pages: 31-41

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Six1 is a key regulator of the developmental and evolutionary architecture of sensory neurons in craniates2014

    • Author(s)
      H. Yajima, M. Suzuki, H. Ochi, K. Ikeda, S. Sato, K. Yamamura, H. Ogino, N. Ueno and K. Kawakami
    • Journal Title

      BMC Biol

      Volume: 12 Issue: 1 Pages: 40-40

    • DOI

      10.1186/1741-7007-12-40

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 全ゲノム倍化直後の脊椎動物胚の遺伝子発現動態2014

    • Author(s)
      Ochi H and Ogino H
    • Organizer
      第37回日本分子生物学会, ワークショップ: 生態進化発生学 (Eco-Evo-Devo)とは言うけども
    • Place of Presentation
      神奈川県横浜市パシフィック横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集技術TALENとCRISPR/Cas9を用いた遺伝子発現調節領域のゲノムワイドな機能解析2014

    • Author(s)
      鈴木菜花、星島一幸、荻野肇、越智陽城
    • Organizer
      第22回山形分子生物学セミナー
    • Place of Presentation
      山形県山形市山形大学理学部
    • Year and Date
      2014-11-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] ゲノム編集技術 TALENを用いたアカハライモリのチロシナーゼ遺伝子の破壊2014

    • Author(s)
      平野 高大、越智陽城、星島一幸、竹島一仁、星島一幸、渡辺-高山絵理子、渡辺明彦
    • Organizer
      第22回山形分子生物学セミナー
    • Place of Presentation
      山形県山形市山形大学理学部
    • Year and Date
      2014-11-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] ツメガエルのゲノム情報とトランスジェニック技術を使った再生応答エンハンサーの同定2014

    • Author(s)
      越智陽城
    • Organizer
      第1回イベリアイモリの会
    • Place of Presentation
      鳥取県鳥取市鳥取大学医学部
    • Year and Date
      2014-11-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] Gene expression dynamics in the artificially genome duplicated vertebrate embryo.2014

    • Author(s)
      Ochi, H.
    • Organizer
      第86回日本遺伝学会, ワークショップ: ゲノム編集技術と両生類遺伝学の最先端
    • Place of Presentation
      滋賀県長浜市長浜バイオ大学
    • Year and Date
      2014-09-17 – 2014-09-19
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Modification of cell differentiation competence by histione H3K27 demethylase.2014

    • Author(s)
      Ogino H., Sudou S., Kawaguchi A., Ochi H.
    • Organizer
      第85回 日本動物学会, ワークショップ: ナショナルバイオリソース
    • Place of Presentation
      宮城県仙台市東北大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Identification of a cis-regulagory module for glomerular regeneration using comparative genomics and transgenesis techniques for amphbian.2014

    • Author(s)
      Suzuki N., Hoshijima, K., Ogino, H., Ochi H.
    • Organizer
      第85回 日本動物学会 ワークショップ: ゲノム情報と胚誘導形態形成研究のクロストーク
    • Place of Presentation
      宮城県仙台市東北大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Transcriptional regulators in hippo pathway control organ growth during tail regeneration in Xenopus tadpoles2014

    • Author(s)
      林 真一、越智陽城、荻野 肇、川住 愛子、亀井 保博、田村 宏治、横山 仁
    • Organizer
      第85回 日本動物学会
    • Place of Presentation
      宮城県仙台市東北大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Identification of cis-regulatory module for the glomerular regeneration using comparative genomics and transgenesis techniques for amphibian.2014

    • Author(s)
      Nanoka S, Hoshijima Ogino H., Ochi H.
    • Organizer
      International Workshop on Developmental and Regeneration Biology in Yamagata
    • Place of Presentation
      山形県山形市山形大学理学部
    • Year and Date
      2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Tyrosinase gene knockout by TALEN technology in the red-bellied new2014

    • Author(s)
      Hirano K., Ochi H., Hoshijima K., Takeshima K., Watanabe E., Watanabe A.
    • Organizer
      International Workshop on Developmental and Regeneration Biology in Yamagata
    • Place of Presentation
      山形県山形市山形大学理学部
    • Year and Date
      2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] The impact of whole genome duplication on vertebrate evolution: Lessons from theartificially tetraploidized embryo2014

    • Author(s)
      Nanoka S., Ogino H., Ochi, H.
    • Organizer
      47th Japanese Society of Developmental Biologist/Asia-Pacific Developmental Biology Network
    • Place of Presentation
      愛知県名古屋市ウインク愛知
    • Year and Date
      2014-05-27 – 2014-05-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Identfication of a cis-regulatory module for glomerular regeneration2014

    • Author(s)
      Sasaki Y., Tamura Y., Hoshijima K., Ogino, H., Ochi H.
    • Organizer
      47th Japanese Society of Developmental Biologist/Asia-Pacific Developmental Biology Network
    • Place of Presentation
      愛知県名古屋市ウインク愛知
    • Year and Date
      2014-05-27 – 2014-05-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Activation of H3K27 methlytransferase and demethylase genes during Xenopus tail regeneration2014

    • Author(s)
      Kawaguchi A., Ochi H., Sudou N., Ogino H.
    • Organizer
      47th Japanese Society of Developmental Biologist/Asia-Pacific Developmental Biology Network
    • Place of Presentation
      愛知県名古屋市ウインク愛知
    • Year and Date
      2014-05-27 – 2014-05-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Manipulation of On-Off switch for gene expression using TALEN: an advanced tool for genome engineering2014

    • Author(s)
      Ochi H., Hoshijima K., Ogino H.
    • Organizer
      Energy Devices and Nanotechnology
    • Place of Presentation
      山形県米沢市山形大学工学部
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Yap1, Transcription Regulator in the Hippo Signaling Pathway is Required for Xenopus Limb Bud Regeneration32014

    • Author(s)
      Hayashi S., Ochi H., Ogino H., Tamura K., Yokoyama H.
    • Organizer
      CDB symposium 2014, Regeneration of Organs: Programming and Self-Organization
    • Place of Presentation
      兵庫県神戸市理化学研究所発生再生センター
    • Related Report
      2013 Research-status Report
  • [Presentation] Modification of cell differentiation competence by histone H3K27 demethylases and its implication for organ regeneration2013

    • Author(s)
      Ogino, H., Sudou, N., Kawaguchi, A and Ochi, H.
    • Organizer
      第36回 日本分子生物学会年会
    • Place of Presentation
      兵庫県神戸市神戸国際会議場
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] The histone demethylase Jmjd3 stimulates ectopic eye formation by increasing the access of pax6 protein to its target gene2013

    • Author(s)
      須藤則広、川口 茜、越智陽城、上田陽子、荒木正介、荻野 肇
    • Organizer
      第6回 Retina Research Meeting
    • Place of Presentation
      東京都千代田区JPタワーホール&カンファレンス
    • Related Report
      2013 Research-status Report
  • [Presentation] アフリカツメガエル四肢再生におけるHippo系路の機能解析2013

    • Author(s)
      林 真一, 越智 陽城、荻野 肇, 田村 宏治、横山 仁
    • Organizer
      第84回 日本動物学会
    • Place of Presentation
      岡山県岡山市岡山大学津島キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] ツメガエル幼生の尾部再生時におけるヒストンメチル化制御因子の働き2013

    • Author(s)
      川口 茜、越智 太陽城、須藤 則広、荻野 肇
    • Organizer
      第84回 日本動物学会
    • Place of Presentation
      岡山県岡山市岡山大学津島キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] Six2とLhx1の腎幹細胞での発現を調節するシス配列の探索2013

    • Author(s)
      佐々木 裕子、田村 友佳、星島 一幸、荻野 肇、越智 陽城
    • Organizer
      第7回日本ツメガエル研究集会
    • Place of Presentation
      山口県美祢市秋吉台国際芸術
    • Related Report
      2013 Research-status Report
  • [Presentation] Evolution of a tissue-specific silencer underlies diversification of paralogous genes2013

    • Author(s)
      Ochi, H., Tamai, T., Nagano, H., Kawaguchi, A., Sudou, N. and Ogino, H.
    • Organizer
      The 17th International Congress of Developmental Biology
    • Place of Presentation
      Mexico, Cancun, Cancun Center, Conventions & Exhibitions
    • Related Report
      2013 Research-status Report
  • [Presentation] The cis-regulatory evolution for developmental robustness and stress response2013

    • Author(s)
      Ochi, H., Kawaguchi, A., Sudou, N., Hoshijima, K. and Ogino, H.
    • Organizer
      46th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      島根県島根市くにびきメッセ
    • Related Report
      2013 Research-status Report
  • [Presentation] The histone demethylase jmjd3 stimulates ectopic eye formation by increasing the access of pax6 protein to its target gene2013

    • Author(s)
      Sudou, N., Kawaguchi, A., Ochi, H. and Ogino, H.
    • Organizer
      46th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      島根県島根市くにびきメッセ
    • Related Report
      2013 Research-status Report
  • [Presentation] Hippo signaling is important for Xenopus limb regenration2013

    • Author(s)
      Hayashi, S., Ochi, H., Ogino, H., Tamura, K., and Yokoyama, H.
    • Organizer
      46th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      島根県島根市くにびきメッセ
    • Related Report
      2013 Research-status Report
  • [Presentation] Role of Six1 in evolution of vertebrate primary sensory system2013

    • Author(s)
      Kawakami, K., Yajima, H., Suzuki, M., Ochi, H., Ikeda, K., Sato, S., Ogino, H., Ueno, N.
    • Organizer
      46th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      島根県島根市くにびきメッセ
    • Related Report
      2013 Research-status Report
  • [Presentation] The H3K27 demethylase, Jmjd3, regulates pax6 expression for eye development2013

    • Author(s)
      Kawaguchi, A., Ochi, H., Sudou, N. and Ogino, H.
    • Organizer
      46th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      島根県島根市くにびきメッセ
    • Related Report
      2013 Research-status Report
  • [Presentation] ゲノム進化からみた疾患発症 組織再生メカニズムの理解2013

    • Author(s)
      越智 陽城
    • Organizer
      「生物学から医学、そして医療へ」
    • Place of Presentation
      山形県山形市山形大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues2012

    • Author(s)
      Ogino, H., Ochi, H. Tamai, T., Nagano, H., Kawaguchi, A. and Sudou, N
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡 (福岡)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Paralogous enhancers: a crossover point between developmental robustness and Stress response2012

    • Author(s)
      Ochi, H., Tamai, T., Nagano, H., Kawaguchi, A., Sudou, N. and Ogino, H
    • Organizer
      The 14th Xenopus international conference
    • Place of Presentation
      The Giens Peninsula (Toulon, France)
    • Related Report
      2012 Research-status Report
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues2012

    • Author(s)
      Ogino, H., Ochi, H., Tamai, T., Nagano, H., Kawaguchi, A. and Sudou, N.
    • Organizer
      The 14th Xenopus international conference
    • Place of Presentation
      The Giens Peninsula (Toulon, France)
    • Related Report
      2012 Research-status Report
  • [Presentation] Analysis of the Xenopus laevis J-strain genome by BAC end sequencing FISH, and RNA-sequence2012

    • Author(s)
      Takahashi, S (17名の著者のうち9番目)
    • Organizer
      The 14th Xenopus international conference
    • Place of Presentation
      The Giens Peninsula (Toulon, France)
    • Related Report
      2012 Research-status Report
  • [Presentation] ゲノム倍化によるシス調節機構の進化2012

    • Author(s)
      越智陽城、荻野肇
    • Organizer
      日本進化学会第14回大会
    • Place of Presentation
      首都大学東京 (東京)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 脊椎動物体幹部一次感覚神経の発生と進化の鍵 The key regulator for developmental and evolutionary architecture of primary sensory neurons in craniates.2012

    • Author(s)
      矢嶋浩、鈴木誠、越智陽城、池田啓子、佐藤滋、荻野肇、上野直人、川上潔
    • Organizer
      高遠シンポジウム 一般発表
    • Place of Presentation
      高遠さくらホテル (長野)
    • Related Report
      2012 Research-status Report
  • [Presentation] エピジェネティック因子Jmjd3による異所的な細胞分化と器官形成の促進 Stimulation of ectopic cell differentiation and organ formation by the histone2012

    • Author(s)
      須藤則広、川口茜、越智陽城、荻野肇
    • Organizer
      高遠シンポジウム 一般発表
    • Place of Presentation
      高遠さくらホテル (長野)
    • Related Report
      2012 Research-status Report
  • [Presentation] Key regulator for development and evolutionary switch form Rohon-Beard cells to dorsal root ganglia2012

    • Author(s)
      Yajima, H., Suzuki, M., Ochi, H., Ikeda, K., Sato, S., Ogino, H., Ueno, N. and Kawakami, K
    • Organizer
      ISDB 71th Annual Meeting
    • Place of Presentation
      Hilton Bonaventure Hotel (Montreal, Canada)
    • Related Report
      2012 Research-status Report
  • [Presentation] Paralogous enhancers: a crossover point between developmental robustness and stress response2012

    • Author(s)
      Ochi, H., Kawaguchi, A., Tamai, T. and Ogino, H.
    • Organizer
      第45回日本発生生物学会 第64回日本細胞生物学会合同大会
    • Place of Presentation
      神戸国際会議場、神戸商工会議所 (神戸)
    • Related Report
      2012 Research-status Report
  • [Presentation] Stimulation of ectopic cell differentiation and organ formation by the histone demethylase, Jmjd32012

    • Author(s)
      Sudou, N., Kawaguchi, A., Ochi, H. and Ogino, H.
    • Organizer
      第45回日本発生生物学会 第64回日本細胞生物学会合同大会
    • Place of Presentation
      神戸国際会議場、神戸商工会議所 (神戸)
    • Related Report
      2012 Research-status Report
  • [Presentation] The H3K27 demethylase, JMJD3, is essential for Xenopus eye development2012

    • Author(s)
      Kawaguchi, A., Ochi, H., Sudou N. and Ogino, H.
    • Organizer
      第45回日本発生生物学会 第64回日本細胞生物学会合同大会
    • Place of Presentation
      神戸国際会議場、神戸商工会議所 (神戸)
    • Related Report
      2012 Research-status Report
  • [Book] New Principles in Developmental Processes (eds. Hisato Kondoh, Atushi Kuroiwa), Differential use of paralogous genes via evolution of cis-regulatory elements for divergent expression specificities, Chapter 21)2014

    • Author(s)
      Ochi, H., Kawaguchi, A., Ogino, H.
    • Publisher
      Springer
    • Related Report
      2013 Research-status Report
  • [Book] 変わる (中村桂子 編) 発現調節配列の変化を探る 多様性をつくる鍵はゲノムのどこにある? -2014

    • Author(s)
      越智 陽城
    • Publisher
      新曜社
    • Related Report
      2013 Research-status Report
  • [Remarks] 国立大学法人 山形大学医学部 越智研究室

    • URL

      http://ochi.yu-med-tenure.com/

    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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