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Scaling mechanism revealed by single-molecule detection technologies and mathematical modeling

Research Project

Project/Area Number 24770221
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

ARATA Yukinobu  独立行政法人理化学研究所, 佐甲細胞情報研究室, 研究員 (40360482)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords細胞極性 / PAR/aPKC / 1分子イメージング / 定量計測 / 数理モデル / 1分子イメージング / PAR / 1分子計測 / 数理モデル化 / 1分子計測 / 精密計測
Outline of Final Research Achievements

Spatial distribution of morphogens and polarity proteins is scaled to cell and embryonic size. To reveal molecular and physical basis of the scaling, we measured intracellular protein dynamics using single-molecule detection technologies. By incorporating the parameters to describe the protein dynamics in vivo into a mathematical model, we succeeded in reproducing asymmetric localization of polarity protein PAR-2. Based on the in vivo measurements and theoretical analyses, we demonstrated that the asymmetric PAR-2 localization is maintained by a rapid-local exchange of PAR-2 between the cortex and cytoplasm. We will investigate how the rapid-local exchange contributes to the scaling.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (15 results)

All 2015 2014 2013 2012 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (13 results) (of which Invited: 4 results) Remarks (1 results)

  • [Journal Article] Power law relationship between cell cycle duration and cell volume in the early embryonic development of Caenorhabditis elegans2015

    • Author(s)
      Arata, Y., Takagi, H., Sako, Y., and Sawa. H.
    • Journal Title

      Frontiers in Physiology

      Volume: 28 Pages: 529-529

    • DOI

      10.3389/fphys.2014.00529

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 動物初期胚における 極性タンパク質の局在分布の“Steepness”2015

    • Author(s)
      荒田幸信
    • Organizer
      定量生物学の会
    • Place of Presentation
      福岡
    • Year and Date
      2015-01-11 – 2015-01-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] PAR polarity protein dynamics in the presence of ATP production inhibitor Azide in C. elegans embryos2014

    • Author(s)
      荒田幸信
    • Organizer
      「理論と実験」研究会2014
    • Place of Presentation
      広島
    • Year and Date
      2014-10-09 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Stable maintenance of the cortical PAR-2 asymmetry by the cytoplasmic diffusion in the one-cell C. elegans embryo2014

    • Author(s)
      荒田幸信、廣島通夫、白燦基、小林徹也、柴田達夫、佐甲靖志
    • Organizer
      第52回日本生物物理学会年会(BSJ2014)
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Measurement-based mathematical modeling of PAR-2 protein localization in C. elegans embryo2014

    • Author(s)
      荒田幸信、廣島通夫、白燦基、小林徹也、柴田達夫、佐甲靖志
    • Organizer
      C. elegans development, cell biology and gene expression meeting in association with The 6th Asia-Pacific C. elegans meeting
    • Place of Presentation
      奈良
    • Year and Date
      2014-07-15 – 2014-07-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] 動物の発生におけるPAR/aPKC細胞極性システムの計測に基づいた数理モデル化2013

    • Author(s)
      荒田幸信
    • Organizer
      第51回生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] C. elegans meets single-molecule detection technologies; The embryonic cell polarity system is driven by state transition of PAR-2 protein molecules.2013

    • Author(s)
      Yukinobu Arata
    • Organizer
      19th International C. elegans Meeting
    • Place of Presentation
      UCLA
    • Related Report
      2013 Research-status Report
  • [Presentation] Developmental biology meets single-molecule detection technologies;Measurement-based mathematical modeling of PAR protein localization in C. elegans embryos2013

    • Author(s)
      荒田幸信
    • Organizer
      定量生物学の会 第六回
    • Place of Presentation
      大阪大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 動物の発生における、細胞極性化機構の1分子定量計測と数理モデル化2013

    • Author(s)
      荒田幸信
    • Organizer
      理研シンポジウム「細胞システムの動態と論理IV」
    • Place of Presentation
      埼玉県和光市
    • Related Report
      2012 Research-status Report
  • [Presentation] Quantitative measurement and mathematical modeling of polarity-protein PAR-2 in C. elegans embryos2012

    • Author(s)
      荒田幸信
    • Organizer
      生物物理学会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Research-status Report
  • [Presentation] 受精卵から個体へ:発生における細胞分化と細胞極性2012

    • Author(s)
      荒田幸信
    • Organizer
      最先端光計測とライフサイエンスの近未来ーバイオラマン2012-
    • Place of Presentation
      埼玉県和光市
    • Related Report
      2012 Research-status Report
  • [Presentation] Measurement-Based Mathematical Modeling of PAR Protein Localization in C. elegans embryos

    • Author(s)
      荒田幸信
    • Organizer
      「理論と実験」研究会2013
    • Place of Presentation
      広島大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Developmental biology meets single-molecule detection technologies;Measurement-based mathematical modeling of PAR protein localization in C. elegans embryos

    • Author(s)
      荒田幸信
    • Organizer
      個別セミナー(理研CDBセミナー)
    • Place of Presentation
      理化学研究所神戸研
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 生細胞内タンパク質動態の計測に基づいた、細胞現象の数理モデル化

    • Author(s)
      荒田幸信
    • Organizer
      個別セミナー(東海大学木村研究室)
    • Place of Presentation
      東海大学木村研究室
    • Related Report
      2013 Research-status Report
    • Invited
  • [Remarks] 細胞の変形と動物の形態形成/Cell shape and animal morphogenesis

    • URL

      http://www.biophys.jp/highschool/C-09.html

    • Related Report
      2014 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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