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Analysis of boron-dependent regulatory mechanism of NIP5;1 mRNA degradation in Arabidopsis thaliana

Research Project

Project/Area Number 24780057
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Plant nutrition/Soil science
Research InstitutionThe University of Tokyo

Principal Investigator

TANAKA Mayuki  東京大学, 農学生命科学研究科, 助教 (80546292)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsシロイヌナズナ / ホウ素 / RNAの安定性 / リボソーム / 輸送体 / 5'-非翻訳領域 / トランスポーター / 転写後制御 / ホウ酸輸送体 / NIP5;1 / upstream uORF / 5'非翻訳領域(5'UTR) / 5' 非翻訳領域 (5'UTR)
Outline of Final Research Achievements

Purpose of this study is to understand the regulatory mechanisms of Boron-dependent mRNA degradation of NIP5;1, a boric acid channelin Arabisopsis thaliana.
First, in order to identify genes involved in B-dependent NIP5;1 mRNA degradation, I screened M1 plants from an ethyl methanesulphonate-mutagenized population by GFP fluorescence as an indicator. After screening of M2 plants, five individual mutants were obtained. Second, I revealed that ribosomes stall at the minimum upstream ORF, AUGUAA, in the 5’-untranslated region of NIP5;1, in a boron-dependent manner, and this stalling is accompanied by mRNA degradation. It is possibly that this regulation of gene expression through ribosome stalling at AUGUAA is a general system in eukaryote.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (14 results)

All 2015 2014 2013 2012 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (11 results) (of which Invited: 1 results)

  • [Journal Article] Comparison of BOR1-like gene expression in two genotypes with different boron efficiencies in commercial crop plants in Thailand2014

    • Author(s)
      Leaungthitikanchana, S., Tanaka, M., Lordkaew, S., Jamjod, S., Rerkasem, B. and Fujiwara, T.
    • Journal Title

      Soil Science and Plant Nutrition

      Volume: 60 Issue: 3 Pages: 333-340

    • DOI

      10.1080/00380768.2014.881707

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions.2014

    • Author(s)
      Hanaoka, H., Uraguchi, S., Takano, J., Tanaka, M. and Fujiwara, T.
    • Journal Title

      The Plant Journal

      Volume: 78 Issue: 5 Pages: 890-902

    • DOI

      10.1111/tpj.12511

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Differential expression of three BOR1 genes corresponding to different genomes in response to boron conditions in hexaploid Wheat (Triticum aestivum L.).2013

    • Author(s)
      Leaungthitikanchana, S, Fujibe, T, Tanaka, M, Wang, S, Sotta, N, Takano, J, Fujiwara, T.
    • Journal Title

      Plant and Cell Physiology

      Volume: 54 Issue: 7 Pages: 1056-63

    • DOI

      10.1093/pcp/pct059

    • NAID

      10031189948

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] シロイヌナズナにおける最少uORFを介したホウ素依存的なリボソーム停滞によるmRNA分解・翻訳効率の制御機構2015

    • Author(s)
      田中真幸、反田直之、三輪京子、山下由衣、千葉由佳子、尾之内均、内藤哲、藤原徹
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] ホウ素によるリボソーム停止機構の解析2014

    • Author(s)
      田中真幸
    • Organizer
      植物環境突破力・第5回若手の会
    • Place of Presentation
      レイクフォレストリゾート(京都)
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] 最小uORFでのホウ素遺伝的なリボソーム停滞を介した遺伝的発現制御2014

    • Author(s)
      田中真幸、反田直之、三輪京子、千葉由佳子、尾之内均、内藤哲、藤原徹
    • Organizer
      第16回日本RNA学会年会
    • Place of Presentation
      ウインクあいち(名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] ホウ素に応答してリボソームは最少uORF, AUGUAAで停止する2014

    • Author(s)
      田中真幸、三輪京子、千葉由香子、尾之内均、内藤哲、藤原徹
    • Organizer
      第55回植物生理学会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Research-status Report
  • [Presentation] ホウ素輸送体NIP5;1の5'UTRを介したmRNA分解・翻訳の制御機構2013

    • Author(s)
      田中 真幸、三輪京子、千葉由佳子、尾之内 均、内藤 哲、藤原 徹
    • Organizer
      第3回植物RNA研究ネットワークシンポジウム
    • Place of Presentation
      北海道大学
    • Related Report
      2013 Research-status Report
  • [Presentation] ホウ素輸送体NIP5;1遺伝子のホウ素に応答したmRNA分解・翻訳のuORFを介した制御機構2013

    • Author(s)
      田中真幸
    • Organizer
      新学術領域研究「植物環境突破力」第4回若手の会
    • Place of Presentation
      蔵王
    • Related Report
      2013 Research-status Report
  • [Presentation] 田中 真幸2013

    • Author(s)
      シロイヌナズナのホウ素輸送体NIP5;1遺伝子のホウ素に応答したmRNA分解・翻訳効率の制御機構
    • Organizer
      第54回日本植物生理学会年会
    • Place of Presentation
      岡山県岡山市 岡山大学 津島キャンパス
    • Related Report
      2012 Research-status Report
  • [Presentation] Analysis of boron-dependent regulatory mechanism of NIP5;1, mRNA degradation in Arabidopsis thaliana roots2013

    • Author(s)
      Mayuki Tanaka
    • Organizer
      International Workshop on Plant Membrane Biology (IWPMB2013)
    • Place of Presentation
      岡山県倉敷市 倉敷芸文館
    • Related Report
      2012 Research-status Report
  • [Presentation] Mayuki Tanaka2012

    • Author(s)
      Boron-dependent mRNA degradation of NIP5;1, boric acid channel, through 5’UTR in Arabidopsis thaliana roots
    • Organizer
      Frontiers in Plant RNA Research 2012
    • Place of Presentation
      北海道札幌市 北海道大学札幌キャンパス
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 田中 真幸2012

    • Author(s)
      植物のホウ素輸送体遺伝子のホウ素に応答したmRNA蓄積の制御機構の解析
    • Organizer
      第7回トランスポーター研究会年会/JTRA2012
    • Place of Presentation
      京都府京都市 京都大学農学部 (京都大学吉田キャンパス北部構内)
    • Related Report
      2012 Research-status Report
  • [Presentation] シロイヌナズナのホウ素輸送体NIP5;1遺伝子のホウ素に応答したmRNA分解・翻訳効率の制御機構

    • Author(s)
      田中真幸、三輪京子、尾之内均、内藤哲、藤原徹
    • Organizer
      第13回東京大学生命科学シンポジウム
    • Place of Presentation
      東京大学
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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