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Resequencing analyses to identify the genes for high temperature tolerance.

Research Project

Project/Area Number 24780082
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionTokyo University of Agriculture

Principal Investigator

KANESAKI YU  東京農業大学, その他部局等, 博士研究員 (70380293)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsシアノバクテリア / 次世代シーケンサー / リシーケンス解析 / 突然変異 / 高温耐性 / 高温感受性 / 遊泳性 / 突然変異株 / 次世代シーケンス / リシーケンス / ゲノム / 高温ストレス
Outline of Final Research Achievements

Cyanobacteria are the photosynthetic microorganisms used as models for basic research on photosynthesis, evolution, and molecular genetics. Recent progress of sequencing technologies enables us to identify mutated loci in bacterial genomes. Here, we performed resequencing analysis of the genomes of five laboratory strains with different phenotypes on thermo-sensitivity. By verification of the identified mutations, we found a mutated locus which determined the thermo-sensitivity of the strains. Furthermore, we isolated the spontaneous thermo-tolerant mutants and identified a number of candidate loci for thermo-tolerance by resequencing analysis. Our strategy of genetics could efficiently identify the associated mutations in the spontaneous mutants which has altered phenotype.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (18 results)

All 2015 2014 2013 2012

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (9 results) (of which Invited: 3 results)

  • [Journal Article] Genomic analysis of parallel-evolved cyanobacterium Synechocystis sp. PCC 6803 under acid stress.2015

    • Author(s)
      Uchiyama J, Kanesaki Y, Iwata N, Asakura R, Funamizu K, Tasaki R, Agatsuma M, Tahara H, Matsuhashi A, Yoshikawa H, Ogawa S, Ohta H
    • Journal Title

      Photosynth Res

      Volume: - Issue: 1-2 Pages: 243-254

    • DOI

      10.1007/s11120-015-0111-3

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of spontaneous suppressor mutants from the photomixotrophically-grown pmgA-disrupted mutant in the cyanobacterium Synechocystis sp. PCC 68032015

    • Author(s)
      Nishijima, Y., Kanesaki, Y., Yoshikawa, H., Ogawa, T., Sonoike, K., Nishiyama, Y. and Hihara, Y.
    • Journal Title

      Photosynth. Res.

      Volume: - Issue: 2-3 Pages: 465-475

    • DOI

      10.1007/s11120-015-0143-8

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Draft genome sequence of strain q-1, an iodide-oxidizing alphaproteobacterium isolated from natural gas brine water.2014

    • Author(s)
      Ehara A, Suzuki H, Kanesaki Y, Yoshikawa H, Amachi S
    • Journal Title

      Genome Announc.

      Volume: 2 Issue: 4

    • DOI

      10.1128/genomea.00659-14

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Bradyrhizobium japonicum Is-34, Which Is Incompatible with Rj4 Genotype Soybeans.2014

    • Author(s)
      Tsurumaru H, Kanesaki Y, Hashimoto S, Okizaki K, Yoshikawa H, Yamakawa T
    • Journal Title

      Genome Announc.

      Volume: 2 Issue: 6

    • DOI

      10.1128/genomea.01316-14

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete genome sequence of Bifidobacterium longum 105-A, a strain with high transformation efficiency.2014

    • Author(s)
      Kanesaki, Y., Masutani, H., Sakanaka, M., Shiwa, Y., Fujisawa, T., Nakamura, Y., Yokota, A., Fukiya, S., Suzuki, T., Yoshikawa, H.
    • Journal Title

      Genome Announc.

      Volume: 2 Issue: 6

    • DOI

      10.1128/genomea.01311-14

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Exopolysaccharide production by a unicellular 1 freshwater cyanobacterium Cyanothece sp. isolated from a rice field in Viet Nam2014

    • Author(s)
      Ohki K., Nguyen Q.T., Yoshikawa S., Kanesaki Y., Okajima M., Kaneko T., Tran H.T.
    • Journal Title

      Journal of Applied Phycology

      Volume: 26 Issue: 1 Pages: 265-272

    • DOI

      10.1007/s10811-013-0094-4

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] DNA replication depends on photosynthetic electron transport in cyanobacteria2013

    • Author(s)
      Ohbayashi
    • Journal Title

      FEMS Microbiol Lett

      Volume: 344 Issue: 2 Pages: 138-44

    • DOI

      10.1111/1574-6968.12166

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Possible involvement of a novel multicopper oxidase in iodide oxidation by alpha-proteobacterium strain Q-12012

    • Author(s)
      Mio Suzuki
    • Journal Title

      Appl.Environ.Microbiol.

      Volume: 78 Issue: 11 Pages: 3941-3949

    • DOI

      10.1128/aem.00084-12

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] External light conditions and internal cell cycle phases entrain accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae2012

    • Author(s)
      Yu Kanesaki, Sousuke Imamura, Ayumi Minoda, Kan Tanaka
    • Journal Title

      DNA Research

      Volume: 19(3) Issue: 3 Pages: 289-303

    • DOI

      10.1093/dnares/dss013

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 高温、強酸性温泉からの極限環境紅藻の新規単離と有用形質の探索2015

    • Author(s)
      兼崎 友、重信直人、小田しおり、齋藤夏帆、宮澤和己、渡辺 智、吉川博文
    • Organizer
      日本農芸化学会 2015年大会
    • Place of Presentation
      岡山
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 有用形質を持つ極限環境紅藻の新規単離と環境ストレス応答遺伝子の解析2015

    • Author(s)
      兼崎 友、重信直人、小田しおり、齋藤夏帆、渡辺 智、吉川博文
    • Organizer
      第56回 日本植物生理学会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 次世代シーケンス技術の発展から考える微生物ゲノム研究の行方2014

    • Author(s)
      兼崎 友
    • Organizer
      第13回 微生物研究会
    • Place of Presentation
      東京
    • Year and Date
      2014-07-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Synechococcus elongatus PCC 7942研究室株間のリシーケンス解析と表現型の差異に関わる原因遺伝子座の探索2014

    • Author(s)
      小澤啓悟、兼崎友、志波優、渡辺智、吉川博文
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
  • [Presentation] Synechococcus elongates PCC 7942におけるマルチコピーゲノムの分配制御機構2014

    • Author(s)
      内桶香那、渡辺智、野田明日翔、中武詩津花、大林龍胆、兼崎友、千葉櫻拓、吉川博文
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
  • [Presentation] Resequencing analyses of laboratory strains of Synechococcus elongatus PCC 79422014

    • Author(s)
      Yu Kanesaki, Keigo Ozawa, Marie Suzuki, Yuh Shiwa, Satoru Watanabe, Hirofumi Yoshikawa
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山
    • Related Report
      2013 Research-status Report
  • [Presentation] Whole-genome resequencing of Synechocystis sp. PCC 6803 substrains2012

    • Author(s)
      Yu Kanesaki, Yuh Shiwa, Naoyuki Tajima, Marie Suzuki, Satoru Watanabe, Naoki Sato, Masahiko Ikeuchi, and Hirofumi Yoshikawa
    • Organizer
      14th International Symposium on Phototrophic Prokaryotes
    • Place of Presentation
      Porto, Portugal
    • Related Report
      2012 Research-status Report
  • [Presentation] バクテリアのリシーケンス解析から見えてきたこと2012

    • Author(s)
      兼崎友
    • Organizer
      第33回GCOE談話会:東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Genome analyses of the EPS-producing cyanobacteria2012

    • Author(s)
      兼崎 友、吉川博文
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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