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Structure determination and Characterization of proline-specific aminopeptidases

Research Project

Project/Area Number 24790057
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Physical pharmacy
Research InstitutionHyogo University of Health Sciences

Principal Investigator

NAKANO Hiroaki  兵庫医療大学, 薬学部, 助教 (10378789)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
KeywordsX線結晶解析 / X線溶液散乱 / 宇宙実験 / タンパク質 / コラーゲン / 基質認識 / 地球環境 / CD
Research Abstract

Proline-specific aminopeptidases are critical to the degradation of proline-rich peptides and proteins, such as collagen and its denatured form, gelatin. Collagens are the largest components in animal tissues and the most major hard-to-degrade proteins because of their unique fibrils composed of triple helical wound polypeptides. In this study, we crystallized three of the recombinant enzymes (Pz-A, Pz-B, and AM-1), and performed its preliminary X-ray crystallographic analysis. We have determined the entire structure of the these aminopeptidases, found a very unique apical domain sharing the interface with a domain containing a main active site and described about the characteristic structure and mechanism for the substrate recognition for proly peptides.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (7 results)

All 2014 2013 2012

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results) Book (2 results)

  • [Journal Article] Crystallization and preliminary X-ray crystallographic analysis of Pz peptidase B from Geobacillus collagenovorans MO-12012

    • Author(s)
      Nakano H, Hosokawa A, Tagawa R, Inaka K, Ohta K, Nakatsu T, Kato H, Watanabe K
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun

      Volume: 68(Pt 7) Issue: 7 Pages: 757-9

    • DOI

      10.1107/s1744309112018969

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 既存プロリダーゼとは異なるGly-Pro分解性システインペプチダーゼの生化学的解析と結晶化2014

    • Author(s)
      河野良輔、坂本琢馬、中野博明、渡部邦彦
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県川崎市)
    • Related Report
      2013 Final Research Report
  • [Presentation] 既存プロリダーゼとは異なるGly-Pro 分解性システインペプチダーゼの生化学的解析と結晶化2014

    • Author(s)
      河野 良輔、坂本 琢馬、中野 博明、渡部 邦彦
    • Organizer
      日本農芸化学会2014 年度大会
    • Place of Presentation
      明治大学 生田キャンパス(神奈川県川崎市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Study of a peptidase-associated domain of an aminopeptidase from thermophilic Aneurinibacillus sp. AM-12013

    • Author(s)
      Ryuji Tagawa, Hiroaki Nakano, Kunihiko Watanabe
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都市)
    • Related Report
      2013 Final Research Report
  • [Presentation] Study of a peptidase-associated domain of an aminopeptidase from thermophilic Aneurinibacillus sp. AM-12013

    • Author(s)
      田川龍治、中野博明、渡部邦彦
    • Organizer
      第 51 回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都市)
    • Related Report
      2013 Annual Research Report
  • [Book] タンパク質結晶の最前線2013

    • Author(s)
      杉山成、高野和文、喜多俊介、前仲勝実、福原秀雄、清水義宏、禾晃和、三原恵美子、高木淳一、秋葉宏樹、津本浩平、原利明、山口宏、吉川洋史、丸山美帆子、中野博明、渡部邦彦、松森信明、村上聡、名倉淑子、小笠原諭、田辺幹雄、橘勝、小島謙一、西澤典彦、松村浩由、塚本勝男、馬場清喜、熊坂崇、水野伸宏、溝端栄一、鈴木守、南後恵理子、田中里枝、井上豪、岩田想、濡木理、玉田太郎、川口充康、長野哲雄、多田幸雄、松岳大輔、中迫雅由、野村祐介、坂本泰一、川上勝、菅原道泰、国島直樹、仁田雅弘、三宅隆弘、澤匡明、安達宏昭
    • Publisher
      シーエムシー出版
    • Related Report
      2013 Final Research Report
  • [Book] タンパク質結晶の最前線2013

    • Author(s)
      杉山成、高野和文、前仲勝実、禾晃和、高木淳一、津本浩平、山口宏、丸山美帆子、中野博明、渡部邦彦、松森信明、村上聡、西澤典彦、松村浩由、塚本勝男、馬場清喜、熊坂崇、水野伸宏、溝端栄一、鈴木守、南後恵理子、田中里枝、井上豪、岩田想、濡木理、玉田太郎、川口充康、長野哲雄、多田幸雄、松岳大輔、中迫雅由、安達宏昭
    • Total Pages
      288
    • Publisher
      シーエムシー出版
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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